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| author | Thomas White <taw@physics.org> | 2017-10-02 03:12:45 +0200 |
|---|---|---|
| committer | Thomas White <taw@physics.org> | 2017-10-02 03:12:45 +0200 |
| commit | 1b5e4b045bfd5b5a782d8aef90ef7f0493c151b2 (patch) | |
| tree | b0d21790e6ad65b4b1c4deb1de0a25fb66f1c7ea | |
| parent | 39640b93cddf9ab9272351cc7917fc158cd4d010 (diff) | |
indexamajig: Add missing documentation for --check-peaks
| -rw-r--r-- | doc/man/indexamajig.1 | 5 | ||||
| -rw-r--r-- | src/indexamajig.c | 2 |
2 files changed, 7 insertions, 0 deletions
diff --git a/doc/man/indexamajig.1 b/doc/man/indexamajig.1 index 683c14b0..84322447 100644 --- a/doc/man/indexamajig.1 +++ b/doc/man/indexamajig.1 @@ -342,6 +342,11 @@ Disable retry indexing. After an unsuccessful indexing attempt, indexamajig wou Skip the prediction refinement step. Usually this will decrease the quality of the results and allow false solutions to get through, but occasionally it might be necessary. .PD 0 +.IP \fB--check-peaks +.PD +Check that most of the peaks can be accounted for by the indexing solution. This usually increases the quality of the indexing solutions, but prevents "subtract and retry" multi-lattice indexing from working well. + +.PD 0 .IP \fB--taketwo-member-threshold=\fIn\fR .IP \fB--taketwo-len-tolerance=\fIn\fR .IP \fB--taketwo-angle-tolerance=\fIn\fR diff --git a/src/indexamajig.c b/src/indexamajig.c index b7f464de..e986e0c7 100644 --- a/src/indexamajig.c +++ b/src/indexamajig.c @@ -154,6 +154,8 @@ static void show_help(const char *s) " --no-multi Don't repeat indexing to index multiple hits.\n" " --no-retry Don't repeat indexing to increase indexing rate.\n" " --no-refine Skip the prediction refinement step.\n" +" --check-peaks Check that most of the peaks can be accounted for\n" +" by the indexing solution.\n" "\n" "\nOptions for greater performance:\n\n" " -j <n> Run <n> analyses in parallel. Default 1.\n" |