diff options
| author | Thomas White <taw@physics.org> | 2013-02-09 17:35:20 -0800 |
|---|---|---|
| committer | Thomas White <taw@physics.org> | 2013-02-09 17:35:20 -0800 |
| commit | 5a98496730bbbee2bd5e6da6eff416bd9c8c051f (patch) | |
| tree | 23d7e7c9bd2dc99876b2e71591545d8eeeca9def | |
| parent | 8adbbf7d02c66607c435a26d3cab9d28b640f9f1 (diff) | |
Add '--res-cutoff'
| -rw-r--r-- | libcrystfel/src/peaks.c | 9 | ||||
| -rw-r--r-- | libcrystfel/src/peaks.h | 2 | ||||
| -rw-r--r-- | src/im-sandbox.c | 3 |
3 files changed, 8 insertions, 6 deletions
diff --git a/libcrystfel/src/peaks.c b/libcrystfel/src/peaks.c index 31eea0cb..6c09053b 100644 --- a/libcrystfel/src/peaks.c +++ b/libcrystfel/src/peaks.c @@ -714,7 +714,8 @@ static struct integr_ind *sort_reflections(RefList *list, UnitCell *cell, static void integrate_crystal(Crystal *cr, struct image *image, int use_closer, int bgsub, double min_snr, double ir_inn, double ir_mid, double ir_out, - int integrate_saturated, int **bgMasks) + int integrate_saturated, int **bgMasks, + int res_cutoff) { RefList *reflections; struct integr_ind *il; @@ -831,7 +832,7 @@ static void integrate_crystal(Crystal *cr, struct image *image, int use_closer, } //STATUS("%5.2f A, %5.2f, av %5.2f\n", // 1e10/il[i].res, snr, av); - //if ( av < 1.0 ) break; + if ( res_cutoff && (av < 1.0) ) break; } } @@ -846,7 +847,7 @@ static void integrate_crystal(Crystal *cr, struct image *image, int use_closer, void integrate_reflections(struct image *image, int use_closer, int bgsub, double min_snr, double ir_inn, double ir_mid, double ir_out, - int integrate_saturated) + int integrate_saturated, int res_cutoff) { int i; int **bgMasks; @@ -870,7 +871,7 @@ void integrate_reflections(struct image *image, int use_closer, int bgsub, for ( i=0; i<image->n_crystals; i++ ) { integrate_crystal(image->crystals[i], image, use_closer, bgsub, min_snr, ir_inn, ir_mid, ir_out, - integrate_saturated, bgMasks); + integrate_saturated, bgMasks, res_cutoff); } for ( i=0; i<image->det->n_panels; i++ ) { diff --git a/libcrystfel/src/peaks.h b/libcrystfel/src/peaks.h index b00edf00..6be728fe 100644 --- a/libcrystfel/src/peaks.h +++ b/libcrystfel/src/peaks.h @@ -45,7 +45,7 @@ extern void search_peaks(struct image *image, float threshold, extern void integrate_reflections(struct image *image, int use_closer, int bgsub, double min_snr, double ir_inn, double ir_mid, double ir_out, - int integrate_saturated); + int integrate_saturated, int res_cutoff); extern int peak_sanity_check(struct image *image, Crystal **crystals, int n_cryst); diff --git a/src/im-sandbox.c b/src/im-sandbox.c index 17dc3dc6..7494a527 100644 --- a/src/im-sandbox.c +++ b/src/im-sandbox.c @@ -340,7 +340,8 @@ static void process_image(const struct index_args *iargs, iargs->ir_inn, iargs->ir_mid, iargs->ir_out, - iargs->integrate_saturated); + iargs->integrate_saturated, + iargs->res_cutoff); write_chunk(st, &image, hdfile, iargs->include_peaks, iargs->include_reflections); |