indexamajig: Report implausibly negative reflections only after final integration

2 files changed, 9 insertions, 6 deletions

diff --git a/libcrystfel/src/integration.c b/libcrystfel/src/integration.c
index edc6e7eb..05060f70 100644
--- a/libcrystfel/src/integration.c
+++ b/libcrystfel/src/integration.c
@@ -1806,12 +1806,6 @@ static void integrate_rings(IntegrationMethod meth,
 
 	crystal_set_num_saturated_reflections(cr, ic.n_saturated);
 	crystal_set_num_implausible_reflections(cr, ic.n_implausible);
-
-	if ( ic.n_implausible ) {
-		STATUS("Warning: %i implausibly negative reflection%s in %s.\n",
-		       ic.n_implausible, ic.n_implausible>1?"s":"",
-		       image->filename);
-	}
 }
 
 
diff --git a/src/process_image.c b/src/process_image.c
index f5b2dbed..0982bada 100644
--- a/src/process_image.c
+++ b/src/process_image.c
@@ -260,6 +260,15 @@ void process_image(const struct index_args *iargs, struct pattern_args *pargs,
 		ERROR("Error writing stream file.\n");
 	}
 
+	int n = 0;
+	for ( i=0; i<image.n_crystals; i++ ) {
+		n += crystal_get_num_implausible_reflections(image.crystals[i]);
+	}
+	if ( n > 0 ) {
+		STATUS("Warning: %i implausibly negative reflection%s in %s.\n",
+		       n, n>1?"s":"", image.filename);
+	}
+
 	for ( i=0; i<image.n_crystals; i++ ) {
 		cell_free(crystal_get_cell(image.crystals[i]));
 		reflist_free(crystal_get_reflections(image.crystals[i]));