diff options
| author | Thomas White <taw@physics.org> | 2014-09-18 18:10:11 +0200 |
|---|---|---|
| committer | Thomas White <taw@physics.org> | 2014-09-18 18:10:11 +0200 |
| commit | 0a533227b1006b4019ea9fccd0957e8be7138f8d (patch) | |
| tree | d2ff9c81c5ececd501f404388a620eaee9a57f19 /doc/man/process_hkl.1 | |
| parent | 0b1fa4693e4c4df54623cfeb91b3c887191236fa (diff) | |
Tidy up scaling/CCs a bit
Diffstat (limited to 'doc/man/process_hkl.1')
| -rw-r--r-- | doc/man/process_hkl.1 | 15 |
1 files changed, 12 insertions, 3 deletions
diff --git a/doc/man/process_hkl.1 b/doc/man/process_hkl.1 index b5ff885f..330ad55e 100644 --- a/doc/man/process_hkl.1 +++ b/doc/man/process_hkl.1 @@ -69,10 +69,9 @@ Stop processing after \fIn\fR crystals have been successfully merged. The defau .PD 0 .IP \fB--scale\fR .PD -Attempt to scale each pattern for best fit with the current model. +Perform a second pass through the input, scaling each crystal's intensities to best fit the initial model. -Scaling using process_hkl doesn't work very well: use \fBpartialator\fR if you -need more advanced merging techniques. +Use \fBpartialator\fR if you need more advanced merging techniques. .PD 0 .IP \fB--no-polarisation\fR @@ -106,6 +105,16 @@ Merge crystals only if they diffract to beyond \fIn\fR Angstroms resolution. Th .PD Integrate \fIn\fR nm^-1 higher than the apparent resolution limit of each individual crystal. \fIn\fR can be negative to integrate \fIlower\fR than the apparent resolution limit. The default is \fB--rescut=inf\fR, which means no resolution cutoff at all. +.PD 0 +.IP \fB--min-cc=\fIn\fR +.PD +Perform a second pass through the input, merging crystals only if their correlation with the initial model is at least \fIn\fR. + +.PD 0 +.IP \fB--stat=\fIfilename\fR +.PD +Perform a second pass through the input and, for each crystal merged, write a line to \fIfilename\fR containing the filename, scale factor and correlation coefficient with the initial model. The scale factors will all be 1 unless \fB--scale\fR is also used. + .SH CHOICE OF POINT GROUP FOR MERGING One of the main features of serial crystallography is that the orientations of |