diff options
| author | Thomas White <taw@physics.org> | 2012-10-02 17:37:16 +0200 |
|---|---|---|
| committer | Thomas White <taw@physics.org> | 2012-10-02 17:37:16 +0200 |
| commit | f4cb5910fe6981e2ae5a85ac22fd3d64eecf1117 (patch) | |
| tree | 07f37077f6ea7c19afbc8a66a64cdfe14493f6b0 /libcrystfel/src | |
| parent | 5554266d7138e3af55d383e78a0184707c880d37 (diff) | |
| parent | c99176cca2d92dd0a2afa20de1a0a4b1feea6f7c (diff) | |
Merge branch 'master' of ssh://git.bitwiz.org.uk/crystfel
Diffstat (limited to 'libcrystfel/src')
| -rw-r--r-- | libcrystfel/src/cell-utils.c | 21 | ||||
| -rw-r--r-- | libcrystfel/src/peaks.c | 2 |
2 files changed, 16 insertions, 7 deletions
diff --git a/libcrystfel/src/cell-utils.c b/libcrystfel/src/cell-utils.c index 3aaae90e..74f33bb2 100644 --- a/libcrystfel/src/cell-utils.c +++ b/libcrystfel/src/cell-utils.c @@ -683,13 +683,22 @@ UnitCell *match_cell(UnitCell *cell_in, UnitCell *template_in, int verbose, free(cand[2]); /* Reverse the de-centering transformation */ - new_cell_trans = cell_transform_inverse(new_cell, uncentering); - cell_free(new_cell); - cell_set_lattice_type(new_cell, cell_get_lattice_type(template_in)); - cell_set_centering(new_cell, cell_get_centering(template_in)); - cell_set_unique_axis(new_cell, cell_get_unique_axis(template_in)); + if ( new_cell != NULL ) { - return new_cell_trans; + new_cell_trans = cell_transform_inverse(new_cell, uncentering); + cell_free(new_cell); + cell_set_lattice_type(new_cell_trans, + cell_get_lattice_type(template_in)); + cell_set_centering(new_cell_trans, + cell_get_centering(template_in)); + cell_set_unique_axis(new_cell_trans, + cell_get_unique_axis(template_in)); + + return new_cell_trans; + + } else { + return NULL; + } } diff --git a/libcrystfel/src/peaks.c b/libcrystfel/src/peaks.c index f7f6c650..b0b48c2e 100644 --- a/libcrystfel/src/peaks.c +++ b/libcrystfel/src/peaks.c @@ -771,7 +771,7 @@ void integrate_reflections(struct image *image, int use_closer, int bgsub, r = integrate_peak(image, pfs, pss, &fs, &ss, &intensity, &sigma, ir_inn, ir_mid, ir_out, - 1, bgMasks[j]); + 1, bgMasks[pnum]); /* I/sigma(I) cutoff */ if ( intensity/sigma < min_snr ) r = 1; |