Remove old scripts

4 files changed, 0 insertions, 282 deletions

diff --git a/scripts/check-near-bragg b/scripts/check-near-bragg
deleted file mode 100755
index 2130378b..00000000
--- a/scripts/check-near-bragg
+++ /dev/null
@@ -1,107 +0,0 @@
-#!/usr/bin/perl -w
-
-use strict;
-use File::Basename;
-use File::stat;
-
-my $skip = 0;
-
-my $args = join(" ", splice(@ARGV, 1, scalar(@ARGV)-1));
-if ( !($args eq "") ) {
-        printf("Extra arguments for hdfsee: %s\n", $args);
-} else {
-        # Default arguments - feel free to override!
-        $args = "--binning=2 --int-boost=10";
-        printf("Using default arguments for hdfsee: %s\n", $args);
-}
-
-my $file = $ARGV[0];
-
-open(FH, $file);
-open(TMP, "> list.tmp");
-
-my $statbuf = stat($file);
-if ( not $statbuf ) {
-	printf("Couldn't stat stream. Check the filename.\n");
-	exit;
-}
-my $stream_mtime = $statbuf->mtime;
-
-my $in_image = 0;
-my $line;
-my $filename;
-my $event = "";
-my $n_seen = 0;
-
-while ( $line = <FH> ) {
-
-	chomp $line;
-	my $handled = 0;
-
-	if ( $in_image ) {
-		printf(TMP "%s\n", $line);
-		$handled = 1;
-	}
-
-	if ( $line =~ /^Reflections\ measured\ after\ indexing$/ ) {
-		$in_image = 1;
-		$handled = 1;
-	}
-
-	if ( $line =~ /^Image\ filename:\ (.+)$/ ) {
-		$filename = $1;
-		$handled = 1;
-	}
-
-	if ( $line =~ /^Event:\ (.+)$/ ) {
-		$event = $1;
-	}
-
-	if ( $line =~ /^End\ of\ reflections$/ ) {
-
-		close(TMP);
-
-		# Example of how to do "basename" and "prefix":
-		# $filename = "images-old/".basename($filename);
-
-		my $ev;
-		my $evr;
-		if ( $event eq "" ) {
-			$ev = "";
-			$evr = "";
-		} else {
-			$ev = " --event=".$event;
-			$evr = ", event ".$event;
-		}
-
-		$n_seen++;
-		if ( $n_seen > $skip ) {
-
-			my $statbuf = stat($filename);
-			if ( not $statbuf ) {
-				printf("Couldn't stat image file '%s' - does it exist?\n",
-				       $filename);
-				exit;
-			}
-			my $image_mtime = $statbuf->mtime;
-			if ( $image_mtime > $stream_mtime ) {
-				printf(STDERR "WARNING: Image file is newer than stream\n");
-			}
-
-			printf(STDERR "Viewing %s%s\n", $filename, $evr);
-			system("hdfsee ".$filename.$ev.
-			       " --peak-overlay=list.tmp ".$args);
-			if ( $? != 0 ) { exit; }
-		} else {
-			printf(STDERR "Skipping %s%s\n", $filename, $evr);
-		}
-
-		unlink("list.tmp");
-		open(TMP, "> list.tmp");
-		$handled = 1;
-		$in_image = 0;
-		$event = "";
-
-	}
-
-}
diff --git a/scripts/check-peak-detection b/scripts/check-peak-detection
deleted file mode 100755
index 91d21f63..00000000
--- a/scripts/check-peak-detection
+++ /dev/null
@@ -1,153 +0,0 @@
-#!/usr/bin/perl -w
-
-use strict;
-use File::Basename;
-use File::stat;
-
-my $skip = 0;
-
-my $only;
-my $file;
-my $start;
-
-# Horrible option processing
-if ( $ARGV[0] eq "--indexed" ) {
-	$only = "indexed";
-	$file = $ARGV[1];
-	$start = 2;
-} elsif ( $ARGV[0] eq "--not-indexed" ) {
-	$only = "notindexed";
-	$file = $ARGV[1];
-	$start = 2;
-} else {
-	$only = "";
-	$file = $ARGV[0];
-	$start = 1;
-}
-my $args = join(" ", splice(@ARGV, $start, scalar(@ARGV)-1));
-if ( !($args eq "") ) {
-	printf("Extra arguments for hdfsee: %s\n", $args);
-} else {
-	# Default arguments - feel free to override!
-	$args = "--binning=2 --int-boost=10";
-	printf("Using default arguments for hdfsee: %s\n", $args);
-}
-
-open(FH, $file);
-open(TMP, "> list.tmp");
-
-my $statbuf = stat($file);
-if ( not $statbuf ) {
-	printf("Couldn't stat stream. Check the filename.\n");
-	exit;
-}
-my $stream_mtime = $statbuf->mtime;
-
-my $in_image = 0;
-my $line;
-my $filename;
-my $event = "";
-my $indexed;
-my $n_seen = 0;
-
-while ( $line = <FH> ) {
-
-	chomp $line;
-
-	if ( $in_image ) {
-		printf(TMP "%s\n", $line);
-	}
-
-	if ( $line =~ /^Peaks\ from\ peak\ search$/ ) {
-		$in_image = 1;
-	}
-
-	if ( $line =~ /^Image\ filename:\ (.+)$/ ) {
-		$filename = $1;
-	}
-
-	if ( $line =~ /^Event:\ (.+)$/ ) {
-		$event = $1;
-	}
-
-	if ( $line =~ /^indexed_by\ =\ (.*)$/ ) {
-		if ( $1 eq "none" ) {
-			$indexed = 0;
-		} else {
-			$indexed = 1;
-		}
-	}
-
-	if ( $line =~ /^End\ of\ peak\ list$/ ) {
-
-		close(TMP);
-
-		my $show;
-
-		if ( $only eq "indexed" ) {
-			if ( $indexed ) {
-				$show = 1;
-			} else {
-				$show = 0;
-			}
-		} elsif ( $only eq "notindexed" ) {
-			if ( $indexed ) {
-				$show = 0;
-			} else {
-				$show = 1;
-			}
-		} else {
-			$show = 1;
-		}
-
-		if ( !$show ) {
-			printf(STDERR "Not showing %s\n", $filename);
-			unlink("list.tmp");
-			open(TMP, "> list.tmp");
-			$in_image = 0;
-			next;
-		}
-
-		# Example of how to do "basename" and "prefix":
-		# $filename = "images-old/".basename($filename);
-
-		my $ev;
-		my $evr;
-		if ( $event eq "" ) {
-			$ev = "";
-			$evr = "";
-		} else {
-			$ev = " --event=".$event;
-			$evr = ", event ".$event;
-		}
-
-		$n_seen++;
-		if ( $n_seen > $skip ) {
-
-			my $statbuf = stat($filename);
-			if ( not $statbuf ) {
-				printf("Couldn't stat image file '%s' - does it exist?\n",
-				       $filename);
-				exit;
-			}
-			my $image_mtime = $statbuf->mtime;
-			if ( $image_mtime > $stream_mtime ) {
-				printf(STDERR "WARNING: Image file is newer than stream\n");
-			}
-
-			printf(STDERR "Viewing %s%s\n", $filename, $evr);
-			system("hdfsee ".$filename.$ev.
-			       " --peak-overlay=list.tmp ".$args);
-			if ( $? != 0 ) { exit; }
-		} else {
-			printf(STDERR "Skipping %s%s\n", $filename, $evr);
-		}
-
-		unlink("list.tmp");
-		open(TMP, "> list.tmp");
-		$in_image = 0;
-		$event = "";
-
-	}
-
-}
diff --git a/scripts/random-image b/scripts/random-image
deleted file mode 100755
index cabd1e73..00000000
--- a/scripts/random-image
+++ /dev/null
@@ -1,14 +0,0 @@
-#!/bin/bash
-
-FILE=$1
-TEMPFILE=`mktemp $1.XXXXXX`
-
-trap "rm -f $TEMPFILE" EXIT
-sort -R $FILE > $TEMPFILE
-
-for FILENAME in `cat $TEMPFILE`; do
-
-	echo $FILENAME
-	hdfsee --int-boost=10 ${2}${FILENAME}
-
-done
diff --git a/scripts/sequence-image b/scripts/sequence-image
deleted file mode 100755
index 196cdc7e..00000000
--- a/scripts/sequence-image
+++ /dev/null
@@ -1,8 +0,0 @@
-#!/bin/sh
-
-for FILENAME in `cat $1`; do
-
-	~/crystfel/src/hdfsee $2$FILENAME --binning=4 \
-		                      --int-boost=20 --filter-noise
-	
-done