indexamajig: Add --no-revalidate and update manpage

3 files changed, 15 insertions, 7 deletions

diff --git a/src/im-sandbox.c b/src/im-sandbox.c
index aed0b04b..1b460d4e 100644
--- a/src/im-sandbox.c
+++ b/src/im-sandbox.c
@@ -291,9 +291,11 @@ static void process_image(const struct index_args *iargs,
 			iargs->hdf5_peak_path)) {
 			ERROR("Failed to get peaks from HDF5 file.\n");
 		}
-		validate_peaks(&image, iargs->min_int_snr,
-		               iargs->ir_inn, iargs->ir_mid, iargs->ir_out,
-		               iargs->use_saturated);
+		if ( !iargs->no_revalidate ) {
+			validate_peaks(&image, iargs->min_int_snr,
+				       iargs->ir_inn, iargs->ir_mid,
+				       iargs->ir_out, iargs->use_saturated);
+		}
 		break;
 
 		case PEAK_ZAEF:
diff --git a/src/im-sandbox.h b/src/im-sandbox.h
index 50dc599b..3851fb40 100644
--- a/src/im-sandbox.h
+++ b/src/im-sandbox.h
@@ -68,6 +68,7 @@ struct index_args
 	struct copy_hdf5_field *copyme;
 	int integrate_saturated;
 	int use_saturated;
+	int no_revalidate;
 };
 
 
diff --git a/src/indexamajig.c b/src/indexamajig.c
index 57c16932..ae03986c 100644
--- a/src/indexamajig.c
+++ b/src/indexamajig.c
@@ -161,10 +161,12 @@ static void show_help(const char *s)
 "                           least 10%% of the located peaks.\n"
 "     --no-bg-sub          Don't subtract local background estimates from\n"
 "                           integrated intensities.\n"
-"     --use-saturated       During the initial peak search, don't reject\n"
-"                            peaks which contain pixels above max_adu.\n"
-"     --integrate-saturated  During the final integration stage, don't reject\n"
-"                            peaks which contain pixels above max_adu.\n"
+"     --use-saturated      During the initial peak search, don't reject\n"
+"                           peaks which contain pixels above max_adu.\n"
+"     --integrate-saturated During the final integration stage, don't reject\n"
+"                           peaks which contain pixels above max_adu.\n"
+"     --no-revalidate      Don't re-integrate and check HDF5 peaks for\n"
+"                           validity.\n"
 );
 }
 
@@ -248,6 +250,7 @@ int main(int argc, char *argv[])
 	float ir_out = 7.0;
 	int integrate_saturated = 0;
 	int use_saturated = 0;
+	int no_revalidate = 0;
 
 	copyme = new_copy_hdf5_field_list();
 	if ( copyme == NULL ) {
@@ -296,6 +299,7 @@ int main(int argc, char *argv[])
 		{"int-radius",         1, NULL,               14},
 		{"integrate-saturated",0, &integrate_saturated,1},
 		{"use-saturated",0, &use_saturated,            1},
+		{"no-revalidate",      0, &no_revalidate,      1},
 		{0, 0, NULL, 0}
 	};
 
@@ -644,6 +648,7 @@ int main(int argc, char *argv[])
 	iargs.ir_out = ir_out;
 	iargs.use_saturated = use_saturated;
 	iargs.integrate_saturated = integrate_saturated;
+	iargs.no_revalidate = no_revalidate;
 
 	create_sandbox(&iargs, n_proc, prefix, config_basename, fh,
 	                    use_this_one_instead, ofh);