diff options
| author | Thomas White <taw@physics.org> | 2012-03-07 17:50:06 +0100 |
|---|---|---|
| committer | Thomas White <taw@physics.org> | 2012-03-07 17:50:06 +0100 |
| commit | 0014a606ed074e7438c6536cf0fc5a7d5bd790c9 (patch) | |
| tree | cfb431919e77d279d657bbdc50096e03db5da3f0 /src | |
| parent | a16291dd7c0826428b4d3d3b2ba3f48540f3c1c7 (diff) | |
indexamajig: Remove polarization correction
It was totally broken and wrong, and just added noise to the data, and it
should be done at the scaling stage instead of now.
Diffstat (limited to 'src')
| -rw-r--r-- | src/indexamajig.c | 8 |
1 files changed, 1 insertions, 7 deletions
diff --git a/src/indexamajig.c b/src/indexamajig.c index 714c4947..b5bf5e8a 100644 --- a/src/indexamajig.c +++ b/src/indexamajig.c @@ -74,7 +74,6 @@ struct static_index_args int config_noisefilter; int config_verbose; int stream_flags; /* What goes into the output? */ - int config_polar; int config_satcorr; int config_closer; int config_insane; @@ -195,7 +194,6 @@ static void show_help(const char *s) " pixels in each 3x3 region to zero if any of them\n" " have negative values. Intensity measurement will\n" " be performed on the image as it was before this.\n" -" --unpolarized Don't correct for the polarisation of the X-rays.\n" " --no-sat-corr Don't correct values of saturated peaks using a\n" " table included in the HDF5 file.\n" " --threshold=<n> Only accept peaks above <n> ADU. Default: 800.\n" @@ -249,7 +247,6 @@ static void process_image(void *pp, int cookie) int config_cmfilter = pargs->static_args.config_cmfilter; int config_noisefilter = pargs->static_args.config_noisefilter; int config_verbose = pargs->static_args.config_verbose; - int config_polar = pargs->static_args.config_polar; IndexingMethod *indm = pargs->static_args.indm; struct beam_params *beam = pargs->static_args.beam; @@ -382,7 +379,7 @@ static void process_image(void *pp, int cookie) if ( image.reflections != NULL ) { - integrate_reflections(&image, config_polar, + integrate_reflections(&image, pargs->static_args.config_closer, pargs->static_args.config_bgsub, pargs->static_args.min_int_snr); @@ -549,7 +546,6 @@ int main(int argc, char *argv[]) int config_cmfilter = 0; int config_noisefilter = 0; int config_verbose = 0; - int config_polar = 1; int config_satcorr = 1; int config_checkprefix = 1; int config_closer = 1; @@ -615,7 +611,6 @@ int main(int argc, char *argv[]) {"verbose", 0, &config_verbose, 1}, {"pdb", 1, NULL, 'p'}, {"prefix", 1, NULL, 'x'}, - {"unpolarized", 0, &config_polar, 0}, {"no-sat-corr", 0, &config_satcorr, 0}, {"sat-corr", 0, &config_satcorr, 1}, /* Compat */ {"threshold", 1, NULL, 't'}, @@ -972,7 +967,6 @@ int main(int argc, char *argv[]) qargs.static_args.config_cmfilter = config_cmfilter; qargs.static_args.config_noisefilter = config_noisefilter; qargs.static_args.config_verbose = config_verbose; - qargs.static_args.config_polar = config_polar; qargs.static_args.config_satcorr = config_satcorr; qargs.static_args.config_closer = config_closer; qargs.static_args.config_insane = config_insane; |