aboutsummaryrefslogtreecommitdiff
path: root/src
diff options
context:
space:
mode:
authorRichard Kirian <rkirian@asu.edu>2010-12-08 23:20:41 -0700
committerThomas White <taw@physics.org>2012-02-22 15:27:09 +0100
commit9e70c834460f622bce015a01e795024a2d15e247 (patch)
tree638de63522f45d70084d66069258e25bb87969d4 /src
parentf31e9347844d8a708dd166ecfb7d6587d36c3d03 (diff)
index.c: write .img file for mosflm
Diffstat (limited to 'src')
-rw-r--r--src/index.c31
1 files changed, 31 insertions, 0 deletions
diff --git a/src/index.c b/src/index.c
index 2029f910..01e7aa4b 100644
--- a/src/index.c
+++ b/src/index.c
@@ -192,6 +192,36 @@ static void write_spt(struct image *image)
fclose(fh);
}
+/* write a dummy 1x1 pixel image file for mosflm. Without post refinement,
+ mosflm will ignore this, but it must be present.*/
+void write_img(struct image *image)
+{
+ FILE *fh;
+ char filename[1024];
+ unsigned short int * intimage;
+
+ intimage = malloc(sizeof(unsigned short int));
+ intimage[0] = 0;
+
+ snprintf(filename, 1023, "xfel-%i.img", image->id);
+
+ fh = fopen(filename, "w");
+ if ( !fh ) {
+ ERROR("Couldn't open temporary file xfel.spt\n");
+ return;
+ }
+
+ fprintf(fh,"{\nHEADER_BYTES=512;\n");
+ fprintf(fh,"BYTE_ORDER=little_endian;\n");
+ fprintf(fh,"TYPE=unsigned_short;\n");
+ fprintf(fh,"DIM=2;\n");
+ fprintf(fh,"SIZE1=1;\n");
+ fprintf(fh,"SIZE2=1;\n");
+ fprintf(fh,"}\n");
+ while ( ftell(fh) < 512 ) { fprintf(fh," "); };
+ fwrite(fh,sizeof(unsigned short int),1,fh);
+ fclose(fh);
+}
void map_all_peaks(struct image *image)
{
@@ -232,6 +262,7 @@ void index_pattern(struct image *image, UnitCell *cell, IndexingMethod indm,
break;
case INDEXING_MOSFLM :
write_spt(image);
+ write_img(image); /* don't do this every time? */
run_mosflm(image);
break;
case INDEXING_TEMPLATE :