diff options
| -rw-r--r-- | doc/reference/libcrystfel/CrystFEL-docs.sgml | 5 | ||||
| -rw-r--r-- | doc/reference/libcrystfel/CrystFEL-sections.txt | 18 | ||||
| -rw-r--r-- | libcrystfel/src/integration.h | 2 |
3 files changed, 23 insertions, 2 deletions
diff --git a/doc/reference/libcrystfel/CrystFEL-docs.sgml b/doc/reference/libcrystfel/CrystFEL-docs.sgml index 413d2c50..4e527253 100644 --- a/doc/reference/libcrystfel/CrystFEL-docs.sgml +++ b/doc/reference/libcrystfel/CrystFEL-docs.sgml @@ -83,6 +83,11 @@ </chapter> <chapter> + <title>Integration</title> + <xi:include href="xml/integration.xml"><xi:fallback /></xi:include> + </chapter> + + <chapter> <title>Detector</title> <xi:include href="xml/detector.xml"><xi:fallback /></xi:include> </chapter> diff --git a/doc/reference/libcrystfel/CrystFEL-sections.txt b/doc/reference/libcrystfel/CrystFEL-sections.txt index 47516ea3..51e2930c 100644 --- a/doc/reference/libcrystfel/CrystFEL-sections.txt +++ b/doc/reference/libcrystfel/CrystFEL-sections.txt @@ -75,6 +75,7 @@ max_intensity UnitCell LatticeType UnitCellTransformation +rvec <SUBSECTION> cell_new cell_new_from_cell @@ -132,6 +133,7 @@ right_handed str_lattice forbidden_reflection load_cell_from_pdb +lattice_from_str </SECTION> <SECTION> @@ -316,6 +318,7 @@ get_q get_q_for_panel get_tt smallest_q +twod_mapping reverse_2d_mapping largest_q in_bad_region @@ -388,13 +391,15 @@ PartialityModel find_intersections select_intersections update_partialities +polarisation_correction </SECTION> <SECTION> <FILE>peaks</FILE> peak_sanity_check search_peaks -integrate_reflections +integrate_peak +make_BgMask validate_peaks </SECTION> @@ -407,6 +412,17 @@ render_scale <FILE>filter</FILE> filter_cm filter_noise +filter_median +</SECTION> + +<SECTION> +<FILE>integration</FILE> +INTEGRATION_DEFAULTS_PROF2D +INTEGRATION_DEFAULTS_RINGS +INTEGRATION_METHOD_MASK +IntegrationMethod +integrate_all +integration_method </SECTION> <SECTION> diff --git a/libcrystfel/src/integration.h b/libcrystfel/src/integration.h index b438e090..1273348d 100644 --- a/libcrystfel/src/integration.h +++ b/libcrystfel/src/integration.h @@ -41,8 +41,8 @@ * @INTEGRATION_NONE: No integration at all * @INTEGRATION_RINGS: Summation of pixel values inside ring, minus background * @INTEGRATION_PROF2D: Two dimensional profile fitting - * * @INTEGRATION_SATURATED: Integrate saturated reflections + * @INTEGRATION_CENTER: Center the peak in the box prior to integration * * An enumeration of all the available integration methods. **/ |