diff options
| -rw-r--r-- | src/indexamajig.c | 7 |
1 files changed, 7 insertions, 0 deletions
diff --git a/src/indexamajig.c b/src/indexamajig.c index 9bdfa5e0..5a47254f 100644 --- a/src/indexamajig.c +++ b/src/indexamajig.c @@ -52,6 +52,11 @@ static void show_help(const char *s) " --gpu Use the GPU to speed up the simulation.\n" "\n" " --near-bragg Output a list of reflection intensities to stdout.\n" +" The intensities in this list are the sum of\n" +" the values in a 7x7 square centered on the pixel\n" +" closest to the Bragg condition. Only pixels with\n" +" fractional indices within 0.1 of the Bragg\n" +" condition will be counted.\n" " --simulate Simulate the diffraction pattern using the indexed\n" " unit cell.\n" " --filter-cm Perform common-mode noise subtraction on images\n" @@ -67,6 +72,8 @@ static void show_help(const char *s) " 'none'. Beware: the units in this file are\n" " reciprocal Angstroms.\n" " --dump-peaks Write the results of the peak search to stdout.\n" +" The intensities in this list are from the\n" +" centroid/integration procedure.\n" " --no-match Don't attempt to match the indexed cell to the\n" " model, just proceed with the one generated by the\n" " auto-indexing procedure.\n" |