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| -rw-r--r-- | INSTALL.md | 4 | ||||
| -rwxr-xr-x | scripts/install-indexers | 93 |
2 files changed, 97 insertions, 0 deletions
@@ -109,6 +109,10 @@ setup file before trying to install CrystFEL, and make sure that the setup file is not automatically referenced in your shell setup files (`.bashrc` and others). +The script `install-indexers`, found in the `scripts` directory of the CrystFEL +source code, can help you to install Mosflm, DirAx and XDS. Run +`scripts/install-indexers --help` for information. + Fedora 22 or later ------------------ diff --git a/scripts/install-indexers b/scripts/install-indexers new file mode 100755 index 00000000..553ab14a --- /dev/null +++ b/scripts/install-indexers @@ -0,0 +1,93 @@ +#!/bin/sh + +# Set the installation location here +# Executables will be placed in $CFPREFIX/bin +CFPREFIX=/usr + +# Set the location of syminfo.lib here +SYMINFO=/usr/share/ccp4/syminfo.lib + +if [ x$1 == x--help ]; then + echo 'This script downloads and installs Mosflm, DirAx and XDS' + echo + echo Step 1: $0 + echo Step 2: $0 'install ' \# perhaps with sudo + echo + echo ' Installation location:' $CFPREFIX + echo 'CCP4 syminfo.lib location:' $SYMINFO + echo + echo 'Please note the license conditions for each program:' + echo ' DirAx: http://www.crystal.chem.uu.nl/distr/dirax/' + echo ' Mosflm: https://www.mrc-lmb.cam.ac.uk/mosflm/mosflm/' + echo ' XDS: https://xds.mr.mpg.de/' + exit 0 +fi + +if [ ! -f $SYMINFO ]; then + echo Cannot find SYMINFO file at $SYMINFO + echo -n You need to install libCCP4 + echo ' (separately, or as part of the CrystFEL installation process)' + echo Or, edit the script to set the correct location + exit 1 +fi + +# Exit immediately if something doesn't work +set -e + +if [ x$1 != xinstall ]; then + + if [ x$USER == xroot ]; then + echo Do not run this as root + exit 1 + fi + + echo ' Installation location:' $CFPREFIX + echo 'CCP4 syminfo.lib location:' $SYMINFO + echo + + mkdir mosflm-tempdir + pushd mosflm-tempdir + wget -nv https://www.mrc-lmb.cam.ac.uk/mosflm/mosflm/ver740/pre-built/mosflm-linux-64-noX11.zip + unzip mosflm-linux-64-noX11.zip + echo '#!/bin/sh' > mosflm + echo "export SYMINFO=$SYMINFO" >> mosflm + echo "$CFPREFIX/bin/mosflm.real -n \$@" >> mosflm + chmod +x mosflm + popd + + mkdir dirax-tempdir + pushd dirax-tempdir + wget -nv http://www.crystal.chem.uu.nl/distr/dirax/download/dirax1.17-Linux-x86_64-static.tar.Z + set +e + tar -xZf dirax1.17-Linux-x86_64-static.tar.Z + if [ $? != 0 ]; then + echo You might need to install package \'ncompress\' + exit 1 + fi + set -e + mv dirax dirax.real + echo "#!/bin/sh" > dirax + echo "exec $CFPREFIX/bin/dirax.real \"\$@\"" >> dirax + chmod +x dirax + popd + + mkdir xds-tempdir + pushd xds-tempdir + wget -nv https://xds.mr.mpg.de/XDS-INTEL64_Linux_x86_64.tar.gz + tar -xzf XDS-INTEL64_Linux_x86_64.tar.gz + popd + +else + + if [ ! -f mosflm-tempdir/mosflm-linux-64-noX11 ]; then + echo Run this script without \'install\' first + exit 1 + fi + set -x + install -D mosflm-tempdir/mosflm-linux-64-noX11 $CFPREFIX/bin/mosflm.real + install mosflm-tempdir/mosflm $CFPREFIX/bin/mosflm + install dirax-tempdir/dirax dirax-tempdir/dirax.real $CFPREFIX/bin + install --mode=644 dirax-tempdir/dirax.commands $CFPREFIX/bin + install xds-tempdir/XDS-INTEL64_Linux_x86_64/xds $CFPREFIX/bin/xds + +fi |