diff options
Diffstat (limited to 'doc/man/indexamajig.1')
| -rw-r--r-- | doc/man/indexamajig.1 | 10 |
1 files changed, 2 insertions, 8 deletions
diff --git a/doc/man/indexamajig.1 b/doc/man/indexamajig.1 index f8178b54..b46b663b 100644 --- a/doc/man/indexamajig.1 +++ b/doc/man/indexamajig.1 @@ -13,7 +13,7 @@ indexamajig \- bulk indexing and data reduction program .SH SYNOPSIS .PP .BR indexamajig -\fB-i\fR \fIfilename\fR \fB-o\fR \fIoutput.stream\fR \fB-g\fR \fIdetector.geom\fR \fB-b\fR \fIbeamline.beam\fR \fB--peaks=\fR\fImethod\fR \fB--indexing=\fR\fImethod\fR +\fB-i\fR \fIfilename\fR \fB-o\fR \fIoutput.stream\fR \fB-g\fR \fIdetector.geom\fR \fB--peaks=\fR\fImethod\fR \fB--indexing=\fR\fImethod\fR [\fBoptions\fR] \fB...\fR .PP \fBindexamajig --help\fR @@ -26,7 +26,7 @@ For minimal basic use, you need to provide the list of diffraction patterns, the .IP \fBindexamajig\fR .PD --i mypatterns.lst -j 10 -g mygeometry.geom --indexing=mosflm,dirax --peaks=hdf5 -b myxfel.beam -o test.stream -p mycell.pdb +-i mypatterns.lst -j 10 -g mygeometry.geom --indexing=mosflm,dirax --peaks=hdf5 -o test.stream -p mycell.pdb .PP More typical use includes all the above, but might also include extra parameters to modify the behaviour. For example, you'll probably want to @@ -195,12 +195,6 @@ Integrate the reflections using \fImethod\fR. See the section titled \fBPEAK IN Read the detector geometry description from \fIfilename\fR. See \fBman crystfel_geometry\fR for more information. .PD 0 -.IP "\fB-b\fR \fIfilename\fR" -.IP \fB--beam=\fR\fIfilename\fR -.PD -Read the beam description from \fIfilename\fR. See \fBman crystfel_geometry\fR for more information. - -.PD 0 .IP "\fB-p\fR \fIunitcell.cell\fR" .IP "\fB-p\fR \fIunitcell.pdb\fR" .IP \fB--pdb=\fR\fIunitcell.pdb\fR |