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Diffstat (limited to 'doc/man')
| -rw-r--r-- | doc/man/ambigator.1 | 3 |
1 files changed, 3 insertions, 0 deletions
diff --git a/doc/man/ambigator.1 b/doc/man/ambigator.1 index 4aa5da98..14b87491 100644 --- a/doc/man/ambigator.1 +++ b/doc/man/ambigator.1 @@ -100,6 +100,9 @@ Use \fIn\fR correlations per crystal. The default is to correlate against every .IP \fB--really-random\fR Be non-deterministic by seeding the random number generator (used to make the initial indexing assignments and select patterns to correlate against) from /dev/urandom. Otherwise, with single-threaded operation (\fB-j 1\fR) on the same data, the results from this program should be the same if it is re-run. Using more than one thread already introduces some non-deterministic behaviour. +.PD 0 +.IP \fB--corr-matrix=\fR\fIfilename\fR +Write the the correlation matrices in HDF5 format to \fIfilename\fR. The file will contain two datasets: \fBcorrelation_matrix\fR and \fBcorrelation_matrix_reindexed\fR. They contain, respectively, the correlation matrix with all crystals in their original orientations and all crystals in the reindexed orientations. If the ambiguity operator is unknown (i.e. neither \fB--operator\fR nor \fB-w\fR were used), then the latter will be zero everywhere. .SH AUTHOR This page was written by Thomas White. |