diff options
Diffstat (limited to 'doc/reference')
| -rw-r--r-- | doc/reference/libcrystfel/CrystFEL-sections.txt | 22 |
1 files changed, 17 insertions, 5 deletions
diff --git a/doc/reference/libcrystfel/CrystFEL-sections.txt b/doc/reference/libcrystfel/CrystFEL-sections.txt index f423ee82..57f508c4 100644 --- a/doc/reference/libcrystfel/CrystFEL-sections.txt +++ b/doc/reference/libcrystfel/CrystFEL-sections.txt @@ -139,6 +139,7 @@ str_lattice forbidden_reflection load_cell_from_pdb load_cell_from_file +write_cell lattice_from_str cell_get_volume </SECTION> @@ -227,6 +228,7 @@ image_get_feature image_add_crystal image_remove_feature free_all_crystals +remove_flagged_crystals </SECTION> <SECTION> @@ -263,7 +265,9 @@ INDEXING_DEFAULTS_DIRAX INDEXING_DEFAULTS_MOSFLM INDEXING_DEFAULTS_XDS INDEXING_DEFAULTS_ASDF +INDEXING_DEFAULTS_FELIX INDEXING_METHOD_MASK +INDEXING_CONTROL_FLAGS build_indexer_list cleanup_indexing prepare_indexing @@ -281,6 +285,9 @@ xds_cleanup asdf_prepare run_asdf asdf_cleanup +felix_prepare +felix_index +felix_cleanup </SECTION> <SECTION> @@ -364,6 +371,7 @@ largest_q in_bad_region mark_resolution_range_as_bad find_orig_panel +find_orig_panel_number panel_is_in_rigid_group rigid_group_is_in_collection single_panel_data_source @@ -491,6 +499,7 @@ peak_sanity_check search_peaks make_BgMask validate_peaks +sort_peaks </SECTION> <SECTION> @@ -523,20 +532,23 @@ integration_method <FILE>stream</FILE> Stream StreamReadFlags -CHUNK_END_MARKER CHUNK_START_MARKER -CRYSTAL_END_MARKER +CHUNK_END_MARKER CRYSTAL_START_MARKER -PEAK_LIST_END_MARKER +CRYSTAL_END_MARKER PEAK_LIST_START_MARKER -REFLECTION_END_MARKER +PEAK_LIST_END_MARKER REFLECTION_START_MARKER -GEOM_END_MARKER +REFLECTION_END_MARKER GEOM_START_MARKER +GEOM_END_MARKER +CELL_START_MARKER +CELL_END_MARKER open_stream_fd_for_write open_stream_for_read open_stream_for_write open_stream_for_write_2 +open_stream_for_write_3 get_stream_fd close_stream read_chunk |