diff options
Diffstat (limited to 'doc')
| -rw-r--r-- | doc/man/indexamajig.1 | 11 |
1 files changed, 10 insertions, 1 deletions
diff --git a/doc/man/indexamajig.1 b/doc/man/indexamajig.1 index ac443906..6d28fdc4 100644 --- a/doc/man/indexamajig.1 +++ b/doc/man/indexamajig.1 @@ -296,9 +296,18 @@ Run \fIn\fR analyses in parallel. Default: 1. Don't attempt to correct the prefix (see \fB--prefix\fR) if it doesn't look correct. .PD 0 +.IP \fB--closer-peak\fR +.PD +If you use this option, indexamajig will integrate around the location of a detected peak instead of the predicted peak location if one is found close to the predicted position, within ten pixels. \fBDon't use this option\fR, because +there is currently no way to set the definition of 'nearby' to be appropriate +for your data. + +.PD 0 .IP \fB--no-closer-peak\fR .PD -Normally, indexamajig will integrate around the location of a detected peak instead of the predicted peak location if one is found close to the predicted position. This option disables this behaviour. Normally it doesn't make much difference either way. +This is the opposite of \fB--closer-peak\fR, and is provided for compatibility +with old scripts because this option selects the behaviour which is now the +default. .PD 0 .IP \fB--insane\fR |