diff options
Diffstat (limited to 'doc')
| -rw-r--r-- | doc/reference/libcrystfel/CrystFEL-sections.txt | 61 |
1 files changed, 42 insertions, 19 deletions
diff --git a/doc/reference/libcrystfel/CrystFEL-sections.txt b/doc/reference/libcrystfel/CrystFEL-sections.txt index d58c5725..3968dd5d 100644 --- a/doc/reference/libcrystfel/CrystFEL-sections.txt +++ b/doc/reference/libcrystfel/CrystFEL-sections.txt @@ -8,6 +8,8 @@ reflist_new reflist_free reflection_new reflection_free +reflist_add_notes +reflist_get_notes <SUBSECTION> add_refl add_refl_to_list @@ -18,7 +20,6 @@ next_refl find_refl next_found_refl <SUBSECTION> -get_excitation_error get_detector_pos get_panel get_partiality @@ -77,6 +78,7 @@ copy_reflist find_equiv_in_list resolution_limits max_intensity +reflist_add_command_and_version </SECTION> <SECTION> @@ -151,32 +153,32 @@ solve_svd AssplodeFlag C_VACUO ELECTRON_CHARGE -ERROR -J_to_eV PLANCK -STATUS THOMSON_LENGTH assplode -biggest -check_prefix chomp -deg2rad -eV_to_J gaussian_noise -safe_basename progress_bar -rad2deg -is_odd poisson_noise notrail +random_flat +flat_noise +show_matrix +STATUS +ERROR +J_to_eV +eV_to_J +biggest smallest +check_prefix +safe_basename +deg2rad +rad2deg +is_odd ph_en_to_lambda ph_lambda_to_en ph_eV_to_lambda ph_lambda_to_eV -random_flat -flat_noise -show_matrix likely unlikely UNUSED @@ -218,6 +220,20 @@ ImageFeatureList SpectrumType sample <SUBSECTION> +imagefile +imagefile_close +imagefile_copy_fields +imagefile_field_list +imagefile_get_hdfile +imagefile_get_type +imagefile_open +imagefile_read +imagefile_read_simple +<SUBSECTION> +new_imagefile_field_list +add_imagefile_field +free_imagefile_field_list +<SUBSECTION> image_add_feature image_feature_closest image_reflection_closest @@ -268,10 +284,11 @@ INDEXING_DEFAULTS_ASDF INDEXING_DEFAULTS_FELIX INDEXING_METHOD_MASK INDEXING_CONTROL_FLAGS -build_indexer_list +setup_indexing cleanup_indexing -prepare_indexing +get_indm_from_string index_pattern +index_pattern_2 indexer_str dirax_prepare run_dirax @@ -314,6 +331,7 @@ describe_symmetry symmetry_name set_symmetry_name get_matrix_name +pointgroup_warning is_centrosymmetric is_centric </SECTION> @@ -351,15 +369,14 @@ rigid_group rg_collection <SUBSECTION> copy_geom -fill_in_values +fill_in_adu free_detector_geometry get_detector_geometry get_detector_geometry_2 write_detector_geometry write_detector_geometry_2 -find_panel +panel_number find_panel_by_name -find_panel_number simple_geometry record_image get_pixel_extents @@ -378,6 +395,7 @@ rigid_group_is_in_collection single_panel_data_source find_rigid_group_collection_by_name detector_has_clen_references +adjust_centering_for_rail </SECTION> <SECTION> @@ -466,6 +484,7 @@ crystal_get_resolution_limit crystal_get_user_flag crystal_get_num_implausible_reflections crystal_get_notes +crystal_get_det_shift crystal_set_cell crystal_set_image crystal_set_mosaicity @@ -479,6 +498,7 @@ crystal_set_user_flag crystal_set_num_implausible_reflections crystal_set_notes crystal_add_notes +crystal_set_det_shift </SECTION> <SECTION> @@ -500,7 +520,9 @@ y_gradient <FILE>peaks</FILE> peak_sanity_check search_peaks +search_peaks_peakfinder8 make_BgMask +peakfinder8 validate_peaks sort_peaks </SECTION> @@ -557,6 +579,7 @@ close_stream read_chunk read_chunk_2 write_chunk +write_chunk_2 rewind_stream is_stream write_command |