diff options
Diffstat (limited to 'libcrystfel/src/integration.c')
| -rw-r--r-- | libcrystfel/src/integration.c | 18 |
1 files changed, 12 insertions, 6 deletions
diff --git a/libcrystfel/src/integration.c b/libcrystfel/src/integration.c index 3082333b..5e7066c2 100644 --- a/libcrystfel/src/integration.c +++ b/libcrystfel/src/integration.c @@ -1092,7 +1092,8 @@ static int suitable_reference(struct intcontext *ic, struct peak_box *bx) static void measure_all_intensities(IntegrationMethod meth, RefList *list, - struct image *image, UnitCell *cell) + struct image *image, UnitCell *cell, + double ir_inn, double ir_mid, double ir_out) { Reflection *refl; RefListIterator *iter; @@ -1100,7 +1101,7 @@ static void measure_all_intensities(IntegrationMethod meth, RefList *list, int i; int n_saturated = 0; - ic.halfw = 4; + ic.halfw = ir_out; ic.image = image; ic.k = 1.0/image->lambda; ic.cell = cell; @@ -1109,6 +1110,8 @@ static void measure_all_intensities(IntegrationMethod meth, RefList *list, return; } + setup_ring_masks(&ic, ir_inn, ir_mid, ir_out); + for ( refl = first_refl(list, &iter); refl != NULL; refl = next_refl(refl, iter) ) @@ -1245,7 +1248,8 @@ static void measure_all_intensities(IntegrationMethod meth, RefList *list, static void estimate_mosaicity(IntegrationMethod meth, Crystal *cr, - struct image *image) + struct image *image, + double ir_inn, double ir_mid, double ir_out) { int msteps = 50; int i; @@ -1258,7 +1262,8 @@ static void estimate_mosaicity(IntegrationMethod meth, Crystal *cr, crystal_set_mosaicity(cr, mmax); list = find_intersections(image, cr); crystal_set_reflections(cr, list); - measure_all_intensities(meth, list, image, crystal_get_cell(cr)); + measure_all_intensities(meth, list, image, crystal_get_cell(cr), + ir_inn, ir_mid, ir_out); for ( i=1; i<=msteps; i++ ) { @@ -1427,7 +1432,8 @@ static void integrate_prof2d(IntegrationMethod meth, Crystal *cr, /* Create initial list of reflections with nominal parameters */ reflections = find_intersections(image, cr); - measure_all_intensities(meth, reflections, image, cell); + measure_all_intensities(meth, reflections, image, cell, + ir_inn, ir_mid, ir_out); /* Find resolution limit of pattern using this list */ //estimate_resolution(reflections, cr, image); @@ -1443,7 +1449,7 @@ static void integrate_prof2d(IntegrationMethod meth, Crystal *cr, /* Create new list of reflections with refined mosaicity */ //reflections = find_intersections(image, cr); - //measure_all_intensities(reflections, image); + //measure_all_intensities(reflections, image, ir_inn, ir_mid, ir_out); crystal_set_reflections(cr, reflections); //estimate_resolution(reflections, cr, image); |