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Diffstat (limited to 'libcrystfel/src/integration.h')
-rw-r--r-- | libcrystfel/src/integration.h | 75 |
1 files changed, 75 insertions, 0 deletions
diff --git a/libcrystfel/src/integration.h b/libcrystfel/src/integration.h new file mode 100644 index 00000000..12e47ff5 --- /dev/null +++ b/libcrystfel/src/integration.h @@ -0,0 +1,75 @@ +/* + * integration.h + * + * Integration of intensities + * + * Copyright © 2012-2013 Deutsches Elektronen-Synchrotron DESY, + * a research centre of the Helmholtz Association. + * + * Authors: + * 2010-2013 Thomas White <taw@physics.org> + * + * This file is part of CrystFEL. + * + * CrystFEL is free software: you can redistribute it and/or modify + * it under the terms of the GNU General Public License as published by + * the Free Software Foundation, either version 3 of the License, or + * (at your option) any later version. + * + * CrystFEL is distributed in the hope that it will be useful, + * but WITHOUT ANY WARRANTY; without even the implied warranty of + * MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the + * GNU General Public License for more details. + * + * You should have received a copy of the GNU General Public License + * along with CrystFEL. If not, see <http://www.gnu.org/licenses/>. + * + */ + +#ifndef INTEGRATION_H +#define INTEGRATION_H + +#ifdef HAVE_CONFIG_H +#include <config.h> +#endif + +#define INTEGRATION_DEFAULTS_RINGS (INTEGRATION_RINGS | INTEGRATION_SATURATED) +#define INTEGRATION_DEFAULTS_REFINE (INTEGRATION_REFINE | INTEGRATION_SATURATED) + +/** + * IntegrationMethod: + * @INTEGRATION_NONE: No integration at all + * @INTEGRATION_RINGS: Predict reflections and integrate them all + * @INTEGRATION_REFINE: As @INTEGRATION_RINGS, but + * + * @INTEGRATION_SATURATED: Integrate saturated reflections + * + * An enumeration of all the available integration methods. + **/ +typedef enum { + + INTEGRATION_NONE = 0, + + /* The core integration methods themselves */ + INTEGRATION_RINGS = 1, + INTEGRATION_REFINE = 2, + + /* Bits at the top of the IntegrationMethod are flags which modify the + * behaviour of the integration. */ + INTEGRATION_SATURATED = 256, + INTEGRATION_CLOSER = 512, + +} IntegrationMethod; + +/* This defines the bits in "IntegrationMethod" which are used to represent the + * core of the integration method */ +#define INTEGRATION_METHOD_MASK (0xff) + +extern IntegrationMethod integration_method(const char *t, int *err); + +extern void integrate_all(struct image *image, IntegrationMethod meth, + int use_closer, double min_snr, + double ir_inn, double ir_mid, double ir_out, + int integrate_saturated); + +#endif /* INTEGRATION_H */ |