diff options
Diffstat (limited to 'libcrystfel')
| -rw-r--r-- | libcrystfel/src/cell.c | 2 | ||||
| -rw-r--r-- | libcrystfel/src/cell.h | 2 | ||||
| -rw-r--r-- | libcrystfel/src/index.c | 2 | ||||
| -rw-r--r-- | libcrystfel/src/index.h | 3 | ||||
| -rw-r--r-- | libcrystfel/src/mosflm.c | 7 | ||||
| -rw-r--r-- | libcrystfel/src/peaks.c | 7 |
6 files changed, 12 insertions, 11 deletions
diff --git a/libcrystfel/src/cell.c b/libcrystfel/src/cell.c index 8412fc62..2e87b770 100644 --- a/libcrystfel/src/cell.c +++ b/libcrystfel/src/cell.c @@ -690,7 +690,7 @@ static int same_vector(struct cvec a, struct cvec b) /* Attempt to make 'cell' fit into 'template' somehow */ UnitCell *match_cell(UnitCell *cell, UnitCell *template, int verbose, - float *tols, int reduce) + const float *tols, int reduce) { signed int n1l, n2l, n3l; double asx, asy, asz; diff --git a/libcrystfel/src/cell.h b/libcrystfel/src/cell.h index cbe84772..bd2719dd 100644 --- a/libcrystfel/src/cell.h +++ b/libcrystfel/src/cell.h @@ -118,7 +118,7 @@ extern UnitCell *rotate_cell(UnitCell *in, double omega, double phi, extern void cell_print(UnitCell *cell); extern UnitCell *match_cell(UnitCell *cell, UnitCell *tempcell, int verbose, - float *ltl, int reduce); + const float *ltl, int reduce); extern UnitCell *match_cell_ab(UnitCell *cell, UnitCell *tempcell); diff --git a/libcrystfel/src/index.c b/libcrystfel/src/index.c index 3d0f164b..2baa2644 100644 --- a/libcrystfel/src/index.c +++ b/libcrystfel/src/index.c @@ -157,7 +157,7 @@ void map_all_peaks(struct image *image) void index_pattern(struct image *image, UnitCell *cell, IndexingMethod *indm, int cellr, int verbose, IndexingPrivate **ipriv, - int config_insane, float *ltl) + int config_insane, const float *ltl) { int i; int n = 0; diff --git a/libcrystfel/src/index.h b/libcrystfel/src/index.h index c4e15f09..9d23f3fb 100644 --- a/libcrystfel/src/index.h +++ b/libcrystfel/src/index.h @@ -74,7 +74,8 @@ extern void map_all_peaks(struct image *image); extern void index_pattern(struct image *image, UnitCell *cell, IndexingMethod *indm, int cellr, int verbose, - IndexingPrivate **priv, int config_insane, float *ltl); + IndexingPrivate **priv, int config_insane, + const float *ltl); extern void cleanup_indexing(IndexingPrivate **priv); diff --git a/libcrystfel/src/mosflm.c b/libcrystfel/src/mosflm.c index 3e29a4f8..0032a095 100644 --- a/libcrystfel/src/mosflm.c +++ b/libcrystfel/src/mosflm.c @@ -379,7 +379,6 @@ static int mosflm_readable(struct image *image, struct mosflm_data *mosflm) rval = read(mosflm->pty, mosflm->rbuffer+mosflm->rbufpos, mosflm->rbuflen-mosflm->rbufpos); - if ( (rval == -1) || (rval == 0) ) return 1; mosflm->rbufpos += rval; @@ -436,7 +435,6 @@ static int mosflm_readable(struct image *image, struct mosflm_data *mosflm) break; case MOSFLM_INPUT_PROMPT : - mosflm_send_next(image, mosflm); endbit_length = i+7; break; @@ -513,6 +511,7 @@ void run_mosflm(struct image *image, UnitCell *cell) remove(mosflm->newmatfile); mosflm->pid = forkpty(&mosflm->pty, NULL, NULL, NULL); + if ( mosflm->pid == -1 ) { ERROR("Failed to fork for MOSFLM\n"); free(mosflm); @@ -545,6 +544,7 @@ void run_mosflm(struct image *image, UnitCell *cell) mosflm->step = 1; /* This starts the "initialisation" procedure */ mosflm->finished_ok = 0; + do { fd_set fds; @@ -559,7 +559,7 @@ void run_mosflm(struct image *image, UnitCell *cell) sval = select(mosflm->pty+1, &fds, NULL, NULL, &tv); - if ( sval == -1 ) { + if ( sval == -1 ) { int err = errno; ERROR("select() failed: %s\n", strerror(err)); rval = 1; @@ -570,6 +570,7 @@ void run_mosflm(struct image *image, UnitCell *cell) rval = 1; } + } while ( !rval ); close(mosflm->pty); diff --git a/libcrystfel/src/peaks.c b/libcrystfel/src/peaks.c index 477d9345..583dff4c 100644 --- a/libcrystfel/src/peaks.c +++ b/libcrystfel/src/peaks.c @@ -148,10 +148,9 @@ static int cull_peaks(struct image *image) /* Returns non-zero if peak has been vetoed. * i.e. don't use result if return value is not zero. */ -static int integrate_peak(struct image *image, int cfs, int css, - double *pfs, double *pss, - double *intensity, double *sigma, - double ir_inn, double ir_mid, double ir_out) +int integrate_peak(struct image *image, int cfs, int css, + double *pfs, double *pss, double *intensity, double *sigma, + double ir_inn, double ir_mid, double ir_out) { signed int fs, ss; double lim_sq, out_lim_sq, mid_lim_sq; |