diff options
Diffstat (limited to 'libcrystfel')
-rw-r--r-- | libcrystfel/src/reflist-utils.c | 37 | ||||
-rw-r--r-- | libcrystfel/src/reflist-utils.h | 4 | ||||
-rw-r--r-- | libcrystfel/src/stream.c | 3 |
3 files changed, 14 insertions, 30 deletions
diff --git a/libcrystfel/src/reflist-utils.c b/libcrystfel/src/reflist-utils.c index 8f445ff4..f8d14d7a 100644 --- a/libcrystfel/src/reflist-utils.c +++ b/libcrystfel/src/reflist-utils.c @@ -152,23 +152,20 @@ int find_equiv_in_list(RefList *list, signed int h, signed int k, * write_reflections_to_file: * @fh: File handle to write to * @list: The reflection list to write - * @cell: Unit cell to use for generating 1/d values, or NULL. * - * This function writes the contents of @list to @fh, using @cell to generate - * 1/d values to ease later processing. If @cell is NULL, 1/d values will not - * be included ('-' will be written in their place). + * This function writes the contents of @list to @fh, * * Reflections which have a redundancy of zero will not be written. * * The resulting list can be read back with read_reflections_from_file(). **/ -void write_reflections_to_file(FILE *fh, RefList *list, UnitCell *cell) +void write_reflections_to_file(FILE *fh, RefList *list) { Reflection *refl; RefListIterator *iter; fprintf(fh, " h k l I phase sigma(I) " - " 1/d(nm^-1) counts fs/px ss/px\n"); + " counts fs/px ss/px\n"); for ( refl = first_refl(list, &iter); refl != NULL; @@ -193,13 +190,6 @@ void write_reflections_to_file(FILE *fh, RefList *list, UnitCell *cell) /* Reflections with redundancy = 0 are not written */ if ( red == 0 ) continue; - if ( cell != NULL ) { - s = 2.0 * resolution(cell, h, k, l); - snprintf(res, 16, "%10.2f", s/1e9); - } else { - strcpy(res, " -"); - } - if ( have_phase ) { snprintf(phs, 16, "%8.2f", rad2deg(ph)); } else { @@ -207,9 +197,8 @@ void write_reflections_to_file(FILE *fh, RefList *list, UnitCell *cell) } fprintf(fh, - "%3i %3i %3i %10.2f %s %10.2f %s %7i %6.1f %6.1f\n", - h, k, l, intensity, phs, esd_i, res, red, - fs, ss); + "%3i %3i %3i %10.2f %s %10.2f %7i %6.1f %6.1f\n", + h, k, l, intensity, phs, esd_i, red, fs, ss); } } @@ -219,11 +208,8 @@ void write_reflections_to_file(FILE *fh, RefList *list, UnitCell *cell) * write_reflist: * @filename: Filename * @list: The reflection list to write - * @cell: Unit cell to use for generating 1/d values, or NULL. * - * This function writes the contents of @list to @file, using @cell to generate - * 1/d values to ease later processing. If @cell is NULL, 1/d values will not - * be included ('-' will be written in their place). + * This function writes the contents of @list to @file, * * Reflections which have a redundancy of zero will not be written. * @@ -235,7 +221,7 @@ void write_reflections_to_file(FILE *fh, RefList *list, UnitCell *cell) * * Returns: zero on success, non-zero on failure. **/ -int write_reflist(const char *filename, RefList *list, UnitCell *cell) +int write_reflist(const char *filename, RefList *list) { FILE *fh; @@ -250,7 +236,7 @@ int write_reflist(const char *filename, RefList *list, UnitCell *cell) return 1; } - write_reflections_to_file(fh, list, cell); + write_reflections_to_file(fh, list); fprintf(fh, REFLECTION_END_MARKER"\n"); fclose(fh); @@ -284,10 +270,9 @@ RefList *read_reflections_from_file(FILE *fh) if ( strcmp(line, REFLECTION_END_MARKER) == 0 ) return out; - r = sscanf(line, "%i %i %i %f %s %f %s %i %f %f", - &h, &k, &l, &intensity, phs, &sigma, ress, &cts, - &fs, &ss); - if ( (r != 10) && (!first) ) { + r = sscanf(line, "%i %i %i %f %s %f %i %f %f", + &h, &k, &l, &intensity, phs, &sigma, &cts, &fs, &ss); + if ( (r != 9) && (!first) ) { reflist_free(out); return NULL; } diff --git a/libcrystfel/src/reflist-utils.h b/libcrystfel/src/reflist-utils.h index f03be906..b12b8dfa 100644 --- a/libcrystfel/src/reflist-utils.h +++ b/libcrystfel/src/reflist-utils.h @@ -38,9 +38,9 @@ #define REFLECTION_END_MARKER "End of reflections" -extern void write_reflections_to_file(FILE *fh, RefList *list, UnitCell *cell); +extern void write_reflections_to_file(FILE *fh, RefList *list); -extern int write_reflist(const char *filename, RefList *list, UnitCell *cell); +extern int write_reflist(const char *filename, RefList *list); extern RefList *read_reflections_from_file(FILE *fh); diff --git a/libcrystfel/src/stream.c b/libcrystfel/src/stream.c index 7f2e341e..486049bf 100644 --- a/libcrystfel/src/stream.c +++ b/libcrystfel/src/stream.c @@ -285,8 +285,7 @@ void write_chunk(FILE *ofh, struct image *i, struct hdfile *hdfile, int f) if ( i->reflections != NULL ) { fprintf(ofh, REFLECTION_START_MARKER"\n"); - write_reflections_to_file(ofh, i->reflections, - i->indexed_cell); + write_reflections_to_file(ofh, i->reflections); fprintf(ofh, REFLECTION_END_MARKER"\n"); } else { |