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-rw-r--r--libcrystfel/src/index.c1
-rw-r--r--libcrystfel/src/index.h2
2 files changed, 2 insertions, 1 deletions
diff --git a/libcrystfel/src/index.c b/libcrystfel/src/index.c
index 4c82e868..f6e81109 100644
--- a/libcrystfel/src/index.c
+++ b/libcrystfel/src/index.c
@@ -543,6 +543,7 @@ static int check_cell(IndexingFlags flags, Crystal *cr, UnitCell *target,
tolerance, &rm);
if ( out != NULL ) {
+ /* Replace crystal's cell with new one */
cell_free(crystal_get_cell(cr));
crystal_set_cell(cr, out);
rtnl_mtx_free(rm);
diff --git a/libcrystfel/src/index.h b/libcrystfel/src/index.h
index ec7ed61b..eb5cf7e4 100644
--- a/libcrystfel/src/index.h
+++ b/libcrystfel/src/index.h
@@ -122,7 +122,7 @@ typedef enum {
INDEXING_CHECK_PEAKS = 32,
/** Check that the unit cell agrees with the target cell */
- INDEXING_CHECK_CELL = 32,
+ INDEXING_CHECK_CELL = 64,
} IndexingFlags;