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-rw-r--r--src/hdfsee.c344
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diff --git a/src/hdfsee.c b/src/hdfsee.c
deleted file mode 100644
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--- a/src/hdfsee.c
+++ /dev/null
@@ -1,344 +0,0 @@
-/*
- * hdfsee.c
- *
- * Quick yet non-crappy HDF viewer
- *
- * Copyright © 2012-2020 Deutsches Elektronen-Synchrotron DESY,
- * a research centre of the Helmholtz Association.
- * Copyright © 2012 Richard Kirian
- *
- * Authors:
- * 2009-2014 Thomas White <taw@physics.org>
- * 2014 Valerio Mariani
- * 2012 Richard Kirian
- *
- * This file is part of CrystFEL.
- *
- * CrystFEL is free software: you can redistribute it and/or modify
- * it under the terms of the GNU General Public License as published by
- * the Free Software Foundation, either version 3 of the License, or
- * (at your option) any later version.
- *
- * CrystFEL is distributed in the hope that it will be useful,
- * but WITHOUT ANY WARRANTY; without even the implied warranty of
- * MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the
- * GNU General Public License for more details.
- *
- * You should have received a copy of the GNU General Public License
- * along with CrystFEL. If not, see <http://www.gnu.org/licenses/>.
- *
- */
-
-
-#ifdef HAVE_CONFIG_H
-#include <config.h>
-#endif
-
-#include <gtk/gtk.h>
-#include <getopt.h>
-
-#include "dw-hdfsee.h"
-#include "utils.h"
-#include "render.h"
-
-
-/* Global program state */
-DisplayWindow *main_window_list[64];
-size_t main_n_windows = 0;
-
-
-static void show_help(const char *s)
-{
- printf("Syntax: %s [options] image.h5\n\n", s);
- printf(
-"Quick HDF5 image viewer.\n"
-"\n"
-" -h, --help Display this help message.\n"
-" --version Print CrystFEL version number and exit.\n"
-"\n"
-" -p, --peak-overlay=<filename> Draw circles in positions listed in file.\n"
-" --ring-size=<n> Set the size for those circles.\n"
-" -i, --int-boost=<n> Multiply intensity by <n>.\n"
-" -b, --binning=<n> Set display binning to <n>.\n"
-" --filter-noise Apply an aggressive noise filter to the\n"
-" image data.\n"
-" --median-filter=<n> Apply a median filter to the image data.\n"
-" --calibration-mode Start in calibration mode\n"
-" --show-rings Overlay rings that indicate resolution.\n"
-" --simple-rings=XX,YY,... Overlay rings at specified radii XX, YY, ...\n"
-" in pixel units.\n"
-" -c, --colscale=<scale> Use the given colour scale. Choose from:\n"
-" mono : Greyscale, black is zero.\n"
-" invmono : Greyscale, white is zero.\n"
-" colour : Colour scale:\n"
-" black-blue-pink-red-orange-\n"
-" -yellow-white.\n"
-" -e, --image=<element> Start up displaying this image from the\n"
-" HDF5 file. When this option is used,\n"
-" information about the data layout\n"
-" from the geometry file is ignored (See\n"
-" manual page).\n"
-" Example: /data/data0.\n"
-" --event=<event code> Event to show from multi-event file.\n"
-" -g, --geometry=<filename> Use geometry from file for display.\n"
-" (When this option is used, the value of\n"
-" of the -e parameter is ignored)\n"
-" -o, --rigid-groups=<coll> Use rigid group collection <coll>.\n"
-"\n");
-}
-
-
-/* Called to notify that an image display window has been closed */
-void hdfsee_window_closed(DisplayWindow *dw)
-{
- size_t i;
-
- for ( i=0; i<main_n_windows; i++ ) {
-
- if ( main_window_list[i] == dw ) {
-
- size_t j;
-
- for ( j=i+1; j<main_n_windows; j++ ) {
- main_window_list[j] = main_window_list[j+1];
- }
-
- }
-
- }
-
- main_n_windows--;
-
- if ( main_n_windows == 0 ) gtk_main_quit();
-
-}
-
-
-int main(int argc, char *argv[])
-{
- int c;
- size_t i;
- int nfiles;
- char *peaks = NULL;
- char *geom_filename = NULL;
- double boost = 1.0;
- int binning = 2;
- int config_noisefilter = 0;
- int config_showrings = 0;
- int config_calibmode =0;
- int colscale = SCALE_COLOUR;
- char *cscale = NULL;
- char *element = NULL;
- char *event = NULL;
- char *rgcoll_name = NULL;
- double ring_size = 5.0;
- char *reslist = NULL;
- double ring_radii[128];
- int n_rings = -1;
- int median_filter = 0;
- struct detector *det_geom = NULL;
- struct beam_params cbeam;
- struct beam_params *beam = NULL;
-
- /* Long options */
- const struct option longopts[] = {
- {"help", 0, NULL, 'h'},
- {"version", 0, NULL, 4 },
- {"peak-overlay", 1, NULL, 'p'},
- {"int-boost", 1, NULL, 'i'},
- {"binning", 1, NULL, 'b'},
- {"filter-noise", 0, &config_noisefilter, 1},
- {"colscale", 1, NULL, 'c'},
- {"image", 1, NULL, 'e'},
- {"geometry", 1, NULL, 'g'},
- {"show-rings", 0, &config_showrings, 1},
- {"ring-size", 1, NULL, 2},
- {"simple-rings", 1, NULL, 'r'},
- {"median-filter", 1, NULL, 3},
- {"calibration-mode", 0, &config_calibmode, 1},
- {"event", 1, NULL, 5},
- {"rigid-groups", 1, NULL, 'o'},
- {0, 0, NULL, 0}
- };
-
- /* Default beam parameters */
- cbeam.photon_energy = 0.0;
- cbeam.photon_energy_from = NULL;
-
- /* This isn't great, but necessary to make the command-line UI and file
- * formats consistent with the other programs, which all use the C
- * locale. Better would be to have all the programs call
- * setlocale(LC_ALL, "") and use the C locale temporarily when reading
- * or writing a stream, reflection file, geometry file etc. */
- gtk_disable_setlocale();
-
- gtk_init(&argc, &argv);
-
- /* Short options */
- while ((c = getopt_long(argc, argv, "hp:b:i:c:e:g:2:r:m:o:",
- longopts, NULL)) != -1) {
-
- char *test;
-
- switch (c) {
-
- case 'h' :
- show_help(argv[0]);
- return 0;
-
- case 4 :
- printf("CrystFEL: " CRYSTFEL_VERSIONSTRING "\n");
- printf(CRYSTFEL_BOILERPLATE"\n");
- return 0;
-
- case 'p' :
- peaks = strdup(optarg);
- break;
-
- case 'i' :
- boost = atof(optarg);
- if ( boost <= 0 ) {
- ERROR("Intensity boost must be a positive"
- " number.\n");
- return 1;
- }
- break;
-
- case 'b' :
- binning = atoi(optarg);
- if ( binning < 1 ) {
- ERROR("Binning must be a positive integer.\n");
- return 1;
- }
- break;
-
- case 'c' :
- cscale = strdup(optarg);
- break;
-
- case 'e' :
- element = strdup(optarg);
- break;
-
- case 'g' :
- geom_filename = strdup(optarg);
- det_geom = get_detector_geometry(geom_filename, &cbeam);
- if ( det_geom == NULL ) {
- ERROR("Failed to read detector geometry "
- "from '%s'\n", optarg);
- return 1;
- }
- beam = &cbeam;
- break;
-
- case 'o' :
- rgcoll_name = strdup(optarg);
- break;
-
- case 2 :
- ring_size = strtod(optarg, &test);
- if ( test == optarg ) {
- ERROR("Ring size must be numerical.\n");
- return 1;
- }
- break;
-
- case 3 :
- median_filter = atoi(optarg);
- break;
-
- case 'r' :
- config_showrings = 1;
- reslist = strdup(optarg);
- int nchar = strlen(reslist);
- char thisvalue[128];
- int i;
- int j = 0;
- n_rings = 0;
- for ( i=0; i<=nchar; i++ ) {
- if ( ( reslist[i] != ',' )
- && ( reslist[i] != '\0' ) )
- {
- thisvalue[j] = reslist[i];
- j++;
- } else {
- thisvalue[j] = '\0';
- ring_radii[n_rings] = atof(thisvalue);
- n_rings++;
- j = 0;
- }
- }
- break;
-
- case 5 :
- event = strdup(optarg);
- break;
-
- case 0 :
- break;
-
- case '?' :
- break;
-
- default :
- ERROR("Unhandled option '%c'\n", c);
- break;
- }
-
- }
-
- nfiles = argc-optind;
-
- if ( nfiles < 1 ) {
- ERROR("You need to give me a file to open!\n");
- return -1;
- }
-
- if ( (element != NULL) && (event != NULL) ) {
- ERROR("The options --event and --element are "
- "mutually exclusive\n");
- return 1;
- }
-
- if ( event != NULL && geom_filename == NULL) {
- ERROR("The '--event' option requires geometry file\n");
- return 1;
- }
-
- if ( cscale == NULL ) cscale = strdup("colour");
- if ( strcmp(cscale, "mono") == 0 ) {
- colscale = SCALE_MONO;
- } else if ( strcmp(cscale, "invmono") == 0 ) {
- colscale = SCALE_INVMONO;
- } else if ( strcmp(cscale, "colour") == 0 ) {
- colscale = SCALE_COLOUR;
- } else if ( strcmp(cscale, "color") == 0 ) {
- colscale = SCALE_COLOUR;
- } else {
- ERROR("Unrecognised colour scale '%s'\n", cscale);
- return 1;
- }
- free(cscale);
-
- for ( i=0; i<nfiles; i++ ) {
- main_window_list[i] = displaywindow_open(argv[optind+i],
- geom_filename,
- peaks, boost, binning,
- config_noisefilter,
- config_calibmode,
- colscale, element,
- event, det_geom, beam,
- rgcoll_name,
- config_showrings,
- ring_radii,
- n_rings,
- ring_size,
- median_filter);
- if ( main_window_list[i] != NULL ) main_n_windows++;
- }
-
- if ( main_n_windows == 0 ) return 0;
- gtk_main();
-
- return 0;
-}
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