diff options
Diffstat (limited to 'src/indexamajig.c')
| -rw-r--r-- | src/indexamajig.c | 20 |
1 files changed, 20 insertions, 0 deletions
diff --git a/src/indexamajig.c b/src/indexamajig.c index add455b4..95420438 100644 --- a/src/indexamajig.c +++ b/src/indexamajig.c @@ -61,6 +61,8 @@ #include <integration.h> #include <image.h> #include <datatemplate.h> +#include <detgeom.h> +#include <peakfinder8.h> #include "im-sandbox.h" #include "im-zmq.h" @@ -210,6 +212,7 @@ static void write_harvest_file(struct index_args *args, write_float(fh, 1, "min_squared_gradient_adu2", args->min_sq_gradient); write_float(fh, 1, "min_snr", args->min_snr); write_bool(fh, 1, "check_hdf5_snr", args->check_hdf5_snr); + write_bool(fh, 1, "peakfinder8_fast", args->peakfinder8_fast); write_bool(fh, 1, "half_pixel_shift", args->half_pixel_shift); write_int(fh, 1, "min_res_px", args->min_res); write_int(fh, 1, "max_res_px", args->max_res); @@ -591,6 +594,10 @@ static error_t parse_arg(int key, char *arg, struct argp_state *state) args->iargs.check_hdf5_snr = 1; break; + case 322: + args->iargs.peakfinder8_fast = 1; + break; + /* ---------- Indexing ---------- */ case 400 : @@ -902,6 +909,8 @@ int main(int argc, char *argv[]) args.iargs.min_sig = 11.0; args.iargs.min_peak_over_neighbour = -INFINITY; args.iargs.check_hdf5_snr = 0; + args.iargs.peakfinder8_fast = 0; + args.iargs.pf_private = NULL; args.iargs.dtempl = NULL; args.iargs.peaks = PEAK_ZAEF; args.iargs.half_pixel_shift = 1; @@ -1020,6 +1029,7 @@ int main(int argc, char *argv[]) "locations by 0.5 pixels"}, {"check-hdf5-snr", 321, NULL, OPTION_NO_USAGE, "Check SNR for peaks from HDF5, " "CXI or MsgPack (see --min-snr)"}, + {"peakfinder8-fast", 322, NULL, OPTION_NO_USAGE, "peakfinder8 fast execution"}, {NULL, 0, 0, OPTION_DOC, "Indexing options:", 4}, {"indexing", 400, "method", 0, "List of indexing methods"}, @@ -1349,11 +1359,21 @@ int main(int argc, char *argv[]) gsl_set_error_handler_off(); + struct pf8_private_data *pf8_data = NULL; + struct detgeom *detgeom = NULL; + if ( args.iargs.peaks == PEAK_PEAKFINDER8 ) { + detgeom = data_template_get_2d_detgeom_if_possible(args.iargs.dtempl); + pf8_data = prepare_peakfinder8(detgeom, args.iargs.peakfinder8_fast); + args.iargs.pf_private = pf8_data; + } + r = create_sandbox(&args.iargs, args.n_proc, args.prefix, args.basename, fh, st, tmpdir, args.serial_start, &args.zmq_params, &args.asapo_params, timeout, args.profile); + if ( pf8_data != NULL ) free_pf8_private_data(pf8_data); + if ( detgeom != NULL) detgeom_free(detgeom); cell_free(args.iargs.cell); free(args.prefix); free(args.temp_location); |