diff options
Diffstat (limited to 'src/indexamajig.c')
| -rw-r--r-- | src/indexamajig.c | 11 |
1 files changed, 9 insertions, 2 deletions
diff --git a/src/indexamajig.c b/src/indexamajig.c index b7ec6345..eef9a381 100644 --- a/src/indexamajig.c +++ b/src/indexamajig.c @@ -65,6 +65,7 @@ struct static_index_args int config_satcorr; int config_closer; int config_insane; + int config_bgsub; float threshold; float min_gradient; struct detector *det; @@ -179,6 +180,8 @@ static void show_help(const char *s) " --unpolarized Don't correct for the polarisation of the X-rays.\n" " --no-sat-corr Don't correct values of saturated peaks using a\n" " table included in the HDF5 file.\n" +" --bg-sub Subtract local background estimates from\n" +" integrated intensities.\n" " --threshold=<n> Only accept peaks above <n> ADU. Default: 800.\n" " --min-gradient=<n> Minimum gradient for Zaefferer peak search.\n" " Default: 100,000.\n" @@ -333,7 +336,8 @@ static void process_image(void *pp, int cookie) 0, 0.1); integrate_reflections(&image, config_polar, - pargs->static_args.config_closer); + pargs->static_args.config_closer, + pargs->static_args.config_bgsub); /* OR */ @@ -505,6 +509,7 @@ int main(int argc, char *argv[]) int config_checkprefix = 1; int config_closer = 1; int config_insane = 0; + int config_bgsub = 0; int config_basename = 0; float threshold = 800.0; float min_gradient = 100000.0; @@ -565,7 +570,8 @@ int main(int argc, char *argv[]) {"record", 1, NULL, 5}, {"cpus", 1, NULL, 6}, {"cpugroup", 1, NULL, 7}, - {"cpuoffset", 1, NULL, 8}, + {"cpuoffset", 1, NULL, 8}, + {"bg-sub", 1, &config_bgsub, 0}, {0, 0, NULL, 0} }; @@ -872,6 +878,7 @@ int main(int argc, char *argv[]) qargs.static_args.config_satcorr = config_satcorr; qargs.static_args.config_closer = config_closer; qargs.static_args.config_insane = config_insane; + qargs.static_args.config_bgsub = config_bgsub; qargs.static_args.cellr = cellr; qargs.static_args.threshold = threshold; qargs.static_args.min_gradient = min_gradient; |