diff options
Diffstat (limited to 'src')
| -rw-r--r-- | src/indexamajig.c | 34 |
1 files changed, 17 insertions, 17 deletions
diff --git a/src/indexamajig.c b/src/indexamajig.c index 6300f7ff..28a7bf85 100644 --- a/src/indexamajig.c +++ b/src/indexamajig.c @@ -111,37 +111,37 @@ static void show_help(const char *s) " --no-sat-corr Don't correct values of saturated peaks using a\n" " table included in the HDF5 file.\n" " --threshold=<n> Only accept peaks above <n> ADU in both the\n" -" Zaefferer and Peakfinder8 algorithms." +" Zaefferer and Peakfinder8 algorithms.\n" " Default: 800.\n" " --min-gradient=<n> Minimum squared gradient for Zaefferer peak\n" " search. Default: 100,000.\n" -" --min-snr=<n> Minimum signal-to-noise ratio for peaks, with both" +" --min-snr=<n> Minimum signal-to-noise ratio for peaks, with both\n" " Zaefferer and Peakfinder8 algorithms.\n" " Default: 5.\n" -" --min-pix-count=<n> Only accept peaks if they include more than <n>" -" pixels, in the Peakfinder8 algorithm." +" --min-pix-count=<n> Only accept peaks if they include more than <n>\n" +" pixels, in the Peakfinder8 algorithm.\n" " Default: 2.\n" -" --max-pix-count=<n> Only accept peaks if they include less than <n>" -" pixels, in the Peakfinder8 algorithm." +" --max-pix-count=<n> Only accept peaks if they include less than <n>\n" +" pixels, in the Peakfinder8 algorithm.\n" " Default: 200.\n" " --local-bg-radius=<n> Radius (in pixels) to use for the estimation of\n" " local background in the Peakfinder8 algorithm.\n" " Default: 3.\n" " --min-res=<n> Only accept peaks if they lay at more than <n>\n" -" pixels from the center of the detector, int the\n" +" pixels from the center of the detector, in the\n" " peakfinder8 algorithm. Default: 0.\n" " --max-res=<n> Only accept peaks if they lay at less than <n>\n" -" pixels from the center of the detector, int the\n" +" pixels from the center of the detector, in the\n" " peakfinder8 algorithm. Default: 1200.\n" -" --check-hdf5-snr Check SNR for peaks from --peaks=hdf5.\n" -" --peak-radius=<r> Integration radii for peak search.\n" -" --int-radius=<r> Set the integration radii. Default: 4,5,7.\n" -" --push-res=<n> Integrate higher than apparent resolution cutoff.\n" -" --highres=<n> Absolute resolution cutoff in Angstroms.\n" -" --fix-profile-radius Fix the reciprocal space profile radius for spot\n" -" prediction (default: automatically determine.\n" -" --fix-bandwidth Set the bandwidth for spot prediction.\n" -" --fix-divergence Set the divergence (full angle) for spot prediction.\n" +" --check-hdf5-snr Check SNR for peaks from --peaks=hdf5.\n" +" --peak-radius=<r> Integration radii for peak search.\n" +" --int-radius=<r> Set the integration radii. Default: 4,5,7.\n" +" --push-res=<n> Integrate higher than apparent resolution cutoff.\n" +" --highres=<n> Absolute resolution cutoff in Angstroms.\n" +" --fix-profile-radius Fix the reciprocal space profile radius for spot\n" +" prediction (default: automatically determine.\n" +" --fix-bandwidth Set the bandwidth for spot prediction.\n" +" --fix-divergence Set the divergence (full angle) for spot prediction.\n" "\n" "\nFor time-resolved stuff, you might want to use:\n\n" " --copy-hdf5-field <f> Copy the value of field <f> into the stream. You\n" |