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2019-08-26add stable inline mean variance functionWolfgang Brehm
2019-08-16Add intmat_zeroThomas White
2019-08-16Add rtnl_mtx_is_identity() and rtnl_mtx_is_perm()Thomas White
2019-08-16rtnl_mtx_print and intmat_print: Handle NULL matrixThomas White
2019-08-16Use LIBRARIES instead of LDFLAGSThomas White
2019-08-16cell_print{_full}: Handle NULL cellThomas White
2019-08-16cell_volume: Give answer in m^3, not m^3Thomas White
2019-08-16Fix typo in commentThomas White
2019-08-16rtnl_list: Accept gdc(num,den) = -1 as wellThomas White
2019-08-02Fix a small memory leakThomas White
2019-08-01hdfsee: Fix 0.5 Angstrom resolution ringThomas White
2019-07-31copy_geom: Tidy up logic some moreThomas White
2019-07-31copy_geom: Fix order of operationsThomas White
2019-07-30Stream: don't skip over first chunk if there's no geometry fileThomas White
2019-07-30Spectrum: Define Gaussian using area, not heightThomas White
2019-07-29Re-implement copy_geom()Thomas White
The old version assumed that the rigid groups appeared in the new list in the same order as the old one. Note the use of subscript "i" for both arrays here: if ( rigid_group_is_in_collection( in->rigid_group_collections[rgci], in->rigid_groups[i]) ) [....] add_to_rigid_group_coll(rgcoll, out->rigid_groups[i]); However, the new list of rigid groups, out->rigid_groups, was constructed not by copying the old list (in->rigid_groups), but rather by iterating over the panels and adding the groups as they were encountered. Therefore, the assumption of same ordering was invalid, and the new rigid group collection incorrect.
2019-07-29panel_number(): Make args constThomas White
2019-07-29Formatting/commentsThomas White
2019-07-29Remove old rg_delta stuffThomas White
2019-07-24indexamajig: Free spectrum if it was generated for this imageThomas White
2019-07-24indexamajig: Set Gaussian spectrum if one is not providedThomas White
2019-07-24compare_cell_parameters_and_orientation(): Fix documentation and variable namesThomas White
2019-07-22ambigator: Use three pre-defined resolution bins if no resolution limits are ↵Thomas White
given
2019-07-19peakFinder9: remove references to image.num_peaks etcThomas White
2019-07-19Increase maximum geometry length from streamThomas White
It's already too small
2019-07-17zmq: Remove reference to image.num_peaksThomas White
See 636eb6116961296791bae35c40fd9438aa946827
2019-07-17Merge branch 'tom/zmq'Thomas White
2019-07-17partialator: Add "offset" model (Ewald sphere offset assuming monochromatic ↵Thomas White
beam)
2019-07-17partialator: Allow refinement of any partiality modelThomas White
2019-07-17Don't repeat scaling when refiningThomas White
This seems to be a major cause of "going off the rails", and the surfaces look reasonable (in fact, better) without it. Plus, if the user says --no-scale, there should be no scaling at all.
2019-07-17partialator: Use Spectrum APIThomas White
2019-07-17Comment out debugThomas White
2019-07-17Really Simple MinimiserThomas White
2019-07-17Fix grid scan boundaries to put plot-pr-contourmap's red dot in the right placeThomas White
2019-07-17Improve column headings in logsThomas White
2019-07-17Don't re-scale when calculating FoM during PRThomas White
2019-07-17Modify residual some moreThomas White
2019-07-17Modify residual to give clearer minimum, particularly as function of profile ↵Thomas White
radius
2019-07-17partialator: WIP on new minimiserThomas White
2019-07-17partialator: Only strong reflections in specgraph, and remove resolution ↵Thomas White
limit for pgraph Rationale for pgraph: the viewer already has a resolution selector.
2019-07-17partial_sim: Use Spectrum APIThomas White
2019-07-17scripts/plot-pr: Allow the use of folder names other than "pr-logs"Thomas White
2019-07-17Weight reflections according to how much they need to be scaled upThomas White
2019-07-17Allow correct_reflection() to correct anything, not just intensitiesThomas White
2019-07-16Add matrix notation docThomas White
2019-07-16hdfsee: Disallow changing image if geometry file was givenThomas White
2019-07-16hdfile_get_string_value(): Detect non-scalar stringThomas White
Handling strings in HDF5 is already a complete pain. Eventually we should handle an array of strings, but it's too hard for now.
2019-07-16hdfile_get_value(): Increase maximum number of dimensions to 64Thomas White
3 might be too low for a hypothetical file format with, say, two wildcard dimensions.
2019-07-16Remove warnings about non-scalar valuesThomas White
Already handled by return codes.
2019-07-16Tidy upThomas White
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