CrystFEL - Data processing for serial crystallography

Age	Commit message (Collapse)	Author
2013-06-01	scripts/check-peak-detection: Fix	Thomas White

2013-06-01	Calculate reference profile for all pixels in peak box	Thomas White
	This makes no difference to the actual profile fitting, which only uses the peak region. It just makes it easier to see if the reference profile is sensible or not.
2013-06-01	More space in reference profile display	Thomas White

2013-06-01	prof2d: Use the same mask as rings	Thomas White

2013-06-01	Don't update integrated location from centroid after integration	Thomas White

2013-06-01	hdfsee: Show panel number in numbers window	Thomas White

2013-06-01	Complain if an HDF5 field doesn't exist	Thomas White

2013-06-01	Set mosaicity to zero	Thomas White
	Later on, we'll make it refined
2013-06-01	Fix rounding of pixel coordinates	Thomas White

2013-05-31	Remove duplicate (and incorrect) box boundary check	Thomas White

2013-05-31	Clear screen before showing new peak box or reference profile	Thomas White

2013-05-31	Initialise reference_den to zero	Thomas White

2013-05-31	Initialise box offsets to zero	Thomas White

2013-05-31	Write final coordinates to the right place	Thomas White

2013-05-31	Fix a silly mistake	Thomas White

2013-05-30	Include initial centering offset in stream	Thomas White

2013-05-30	Update peak coordinates after integration	Thomas White

2013-05-30	Fix previous commit	Thomas White

2013-05-30	Remove unused parameter	Thomas White

2013-05-30	Fix uninitialised saturation flag	Thomas White

2013-05-30	Update docs	Thomas White

2013-05-30	Fussiness (extreme)	Thomas White

2013-05-30	indexamajig: Get rid of --use-saturated, because it's now the default	Thomas White

2013-05-30	Update docs	Thomas White

2013-05-30	process_hkl: Add --min-snr	Thomas White

2013-05-30	Fix dummy ReAx prototype (again)	Thomas White

2013-05-30	indexamajig: Get rid of --min-integration-snr	Thomas White
	This functionality belongs in process_hkl.
2013-05-30	Validate peaks using peak search SNR, not integration SNR	Thomas White

2013-05-30	Tidy up	Thomas White

2013-05-28	Add "blackhole" regions to peak integration	Thomas White
	Blackhole regions should be completely ignored, i.e. don't even call boxi() on such a pixel. This is distinct from pixels which can be used (e.g. for initial centroiding), but which happen not to be selected for background or peak integration.
2013-05-28	Add "-cen"	Thomas White

2013-05-28	Attempt to center the box a bit before integration	Thomas White

2013-05-28	Improvements to debug output	Thomas White

2013-05-28	Colours in peak box display (via ncurses)	Thomas White

2013-05-28	Honour "-sat"	Thomas White

2013-05-28	--use-saturated should be the default	Thomas White

2013-05-28	Rename "refine" to "prof2d"	Thomas White

2013-05-28	Move "rings" integration to new peak box framework	Thomas White

2013-05-27	Profile fitting stuff	Thomas White

2013-05-27	hdfsee: Fix segfault on startup	Thomas White

2013-05-27	Debugging output	Thomas White

2013-05-27	Code organisation	Thomas White

2013-05-27	Do the actual profile fitting	Thomas White

2013-05-27	Store all peak boxes	Thomas White

2013-05-27	Assign rigid group for panels which don't have one	Thomas White

2013-05-27	Calculate the reference profiles	Thomas White

2013-05-27	Background fitting	Thomas White

2013-05-27	Integration stuff	Thomas White

2013-05-27	Individual panel arrays	Thomas White

2013-05-27	Initial integration stuff	Thomas White