CrystFEL - Data processing for serial crystallography

Age	Commit message (Collapse)	Author
2012-02-22	Move the "indexed reflection array" thing to where it can't do any harm	Thomas White

2012-02-22	Remove render_hkl --povray and remenants of cubeit	Thomas White

2012-02-22	Reverse earlier accidental snippet	Thomas White

2012-02-22	Remove sum_stack from core	Thomas White

2012-02-22	Move indexing and rendering to libcrystfel	Thomas White

2012-02-22	Remove duplicated files	Thomas White

2012-02-22	Install the headers	Thomas White

2012-02-22	Move a load more stuff into libcrystfel	Thomas White

2012-02-22	Introduce "libcrystfel"	Thomas White

2012-02-22	Fix a potential memory leak	Thomas White

2012-02-22	Check that geometry size matches image size	Thomas White

2012-02-22	Free "copy HDF5 field" list	Thomas White

2012-02-22	indexamajig: Pass the beam parameters properly	Thomas White

2012-02-22	Update makefiles	Thomas White

2012-02-22	Add scripts/gen-sfs for calculating scattering	Thomas White

2012-02-22	partialator: Use an I/sig(I) cutoff for determining scalability	Thomas White

2012-02-22	partialator: Use all reflections (not just the ones found the first time around)	Thomas White

2012-02-22	compare_hkl: Record actual number of (common) reflections used for Rsplit in ↵	Thomas White
	each shell
2012-02-22	get_hkl: Only expand phases we have	Thomas White

2012-02-22	Use the right scaling factor for Rsplit	Thomas White

2012-02-22	Do Poisson on photon counts, not ADU	Thomas White

2012-02-22	Fussiness	Thomas White

2012-02-22	Better sanity check (Miller indices should be ~integers)	Richard A. Kirian

2012-02-22	Add option to limit peak SNR	Richard A. Kirian

2012-02-22	Threshold SNR in peak search	Richard A. Kirian

2012-02-22	partial_sim: Initialise "copyme" to NULL	Thomas White

2012-02-22	indexamajig: Add --copy-hdf5-field option for copying something to the HDF5 file	Thomas White

2012-02-22	Avoid NaN shifts of divergence	Thomas White

2012-02-22	Style	Thomas White

2012-02-22	Take number of dud images into account for partiality graph	Thomas White

2012-02-22	Formatting fussiness	Thomas White

2012-02-22	Rationalise handling of phases in RefList	Thomas White

2012-02-22	Add a FIXME	Thomas White

2012-02-22	process_hkl: Remove old debug	Thomas White

2012-02-22	Test divergence gradient	Thomas White

2012-02-22	Add weighting scheme	Thomas White

2012-02-22	Clamp divergence at zero	Thomas White

2012-02-22	"Fix" divergence gradient	Thomas White

2012-02-22	Total divergence is made up from rocking half the divergence in opposite ↵	Thomas White
	directions
2012-02-22	Move "cubeit" to contrib	Thomas White

2012-02-22	Remove unhelpful warning message	Thomas White

2012-02-22	Show sample standard deviation on intensity histograms	Thomas White
	Not the standard deviation of the mean, i.e. multiply by sqrt(N) for display
2012-02-22	Calculate reflection ESDs, apply minimum redundancy and show ESD on histograms	Thomas White

2012-02-22	Reduce number of bins in intensity histograms	Thomas White

2012-02-22	Fussiness	Thomas White

2012-02-22	Mark the full intensity position on the intensity histogram	Thomas White

2012-02-22	Add comment	Thomas White

2012-02-22	Formatting	Thomas White

2012-02-22	Destroy mutexes when freeing a RefList	Thomas White

2012-02-22	Formatting	Thomas White