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2016-02-29More output when reading reflections failedThomas White
2016-02-29Don't predict 000Thomas White
2016-02-29asdf: Check array bounds before usingThomas White
2016-02-29FormattingThomas White
2016-02-23hdfsee: Fix panel/feature names in numbers windowThomas White
2016-02-23Fixed bug with memspace size in write_locationValerio Mariani
2016-02-12Update manualThomas White
2016-02-09pattern_sim: Initialise stuff for powder HDF5Thomas White
2016-02-09Fix a NULL dereferenceThomas White
2016-02-08FormattingThomas White
2016-02-05Update docsThomas White
2016-02-05felix: fix seg faultKen Beyerlein
2016-02-05partialator: add --output-every-cycle option to write .hkl* and .params ↵Keitaro Yamashita
files in every cycle
2016-02-03Set initial prediction parameters even when not doing prediction refinementThomas White
Silly bug fix. Beamtime programming FTL.
2016-01-30Revert "Allow peak check to pass just by accounting for more than 5 peaks"Thomas White
This reverts commit 693aae4d2219632d15174fe4c4f9d0526d6166c4. Reverting because this allows a very large number (~100% "indexing rate") of false solutions to get through simply by slackening the peak detection parameters. Since we know that "-multi" indexing doesn't work well at the moment, let's fix this properly later.
2016-01-30indexamajig: Restore --no-refineThomas White
Adds yet another indexing option...
2016-01-29Perform prediction refinement straight after indexingThomas White
This allows indexing to be attempted again (either a new method or with "retry") if the prediction refinement fails, increasing overall indexing rate. Side-effect: there are some hoops which would need to be jumped through to store the profile radius before refinement and hence enable scripts/plot-predict-refine to work. For now, we'll ignore this as it's clear that the prediction refinement is working.
2016-01-29felix: return the number of crystalsThomas White
2016-01-29Use a fresh copy of the peak list for each new indexing methodThomas White
2016-01-27asdf: Don't assume that the number of peaks == image_feature_count()Thomas White
Yes, really. Sorry about the crappy API.
2016-01-16scripts/ave-resolution: Show histogram of resolution valuesThomas White
2016-01-15Use only the first two dimensions when using an external bad pixel mask or ↵Thomas White
saturation map
2016-01-15Set indexing -nomulti as the default, and add a warningThomas White
2016-01-13Fix logic for -retry and -multiThomas White
2016-01-08Make indexing "retry" and "multi" optionalThomas White
2016-01-08ambigator: Don't require -yThomas White
The manual says that -y 1 is the default.
2016-01-08Replace incorrect label in geoptimiserValerio Mariani
2016-01-06Rearrange columns in partialator.paramsThomas White
2016-01-06Print filename and event string in the partialator.params output fileValerio Mariani
2016-01-06search_peaks_in_panel(): Fix iteration bounds (again)Thomas White
2015-12-18Saturation map fixesThomas White
2015-12-18Allow peak check to pass just by accounting for more than 5 peaksThomas White
The "old" criterion is still allowed for a pass, but would filter out multi-lattice hits.
2015-12-18"Retry" mechanism for indexingThomas White
This increases the indexing rate a bit in situations where there are lots of weak peaks which, although they may be real, don't help indexing. The weakest 10% of peaks get cut out and the indexing re-run. This also allows multiple hits to be indexed, using the "inelegant peak subtraction method", by retrying indexing in the same way after deleting peaks which are accounted for by the lattice just found.
2015-12-17hdfsee: Update docsThomas White
2015-12-17list_events: Handle broken event listThomas White
2015-12-17Clean up unused codeThomas White
2015-12-15Update paper reference in geoptimiser man pageThomas White
2015-12-13indexamajig: Restart fgets() in pump_chunk() if interrupted by system callThomas White
This fixes the occasional unterminated chunk found in the output.
2015-12-10Fix integration tests for new saturation mapThomas White
2015-12-05Add option for per-pixel saturation valuesThomas White
2015-12-03scripts/turbo-index: Add missing "done"Thomas White
2015-12-01hdfsee: Round panel transformations before passing them to CairoThomas White
This prevents the slight blurring of image data which happened before.
2015-11-27Fix documentationThomas White
2015-11-27indexamajig: Write target unit cell into streamThomas White
2015-11-19Maximum number of iterations for scalingThomas White
2015-11-19partialator: Set default push-res to infinityThomas White
Not needed now that the scaling is more stable
2015-11-19Monitor average BThomas White
2015-11-19Count reflections in merge and scalingThomas White
2015-11-18Move B factor limit to general rejection functionThomas White
2015-11-18No free-flagged reflections in merge for scalingThomas White
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