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2020-10-27partialator: Don't copy detgeomThomas White
Detector geometry is not used for scaling/post-refinement
2020-10-27Add a test for stream readingThomas White
2020-10-27Add a new StreamFlag for generating the detgeom structureThomas White
This is a hack, and should be replaced by something which gets the metadata from the stream rather than hitting the read image file every time.
2020-10-27image_set_zero_{data,mask}: Speed up creation of blank arraysThomas White
2020-10-27Fix a possibly overrun stringThomas White
2020-10-26Label all uses of cell tolerancesThomas White
I'm sick of fixing this same issue over and over again. New rule: any code handling unit cell tolerances MUST be labelled with details of units.
2020-10-26Fix tolerance units in GUIThomas White
2020-10-26cellcompare_check: Factorise code and reduce to 1 repetition of eachThomas White
Otherwise it takes far too long.
2020-10-26Remove polarisation_checkThomas White
It takes far too long (over a minute) and didn't actually test anything. Contribution of a better polarisation unit test would be very welcome!
2020-10-26Meson: Only build gpu_sim_check when OpenCL is availableThomas White
See 8aff8c658925f0. Sometimes, the OpenCL headers are not available at all.
2020-10-23gitlab-ci: Test build with Meson separatelyThomas White
2020-10-23tests/ev_enum{1,2,3}: Fix order of fs/ss in geometryThomas White
2020-10-23new_job -> new_index_jobThomas White
Because we now have new_merge_job as well.
2020-10-23gitlab-ci: Add "make test"Philipp Middendorf
2020-10-23partialator(1): Add missing partiality modelsThomas White
2020-10-23Add continuous integration via .gitlab-ci.ymlPhilipp Middendorf
2020-10-22CrystFELIndexingOpts: Fix incorrect variable for push-res valueThomas White
2020-10-22Skeleton for merging via GUIThomas White
2020-10-22image_expand_frames: When files are not HDF5, just return null eventsThomas White
2020-10-22compare_cell_parameters: Accept R/P pair as equivalentThomas White
See 0f18ff76a3d1f5979db for some discussion.
2020-10-15Shuffle default order of indexing methodsThomas White
2020-10-15Add TakeTwo to the list of indexers automatically usedThomas White
2020-10-15TakeTwo: Limit number of seeds to 10, and reduce MAX_OBS_VECTORS to 300Thomas White
This gives a huge speed improvement, without sacrificing very much in indexing rate.
2020-10-07Revert "Move asdf out of set of indexers used by default"Thomas White
This reverts commit 62183aacf906f4aff771295aa378cff039dd50ff. The apparent slowness was due to a bug introduced in August 2019. See 2a8f415df845064186baa833f9fe1ad91c0f5753.
2020-10-07asdf: Fix incorrect units conversion for cell volumeThomas White
2020-10-07Formatting fussinessThomas White
2020-10-07Improve indexer speed profilingThomas White
2020-10-07FussinessThomas White
Commented out debug message is no longer relevant
2020-10-07TakeTwo: Set tp->optsThomas White
2020-10-07TakeTwo: Fix get_chiral_holohedry for "hexagonal H"Thomas White
Fixes CRYS-240
2020-10-06Move asdf out of set of indexers used by defaultThomas White
Sadly, it has the same fatal flaw as TakeTwo: taking forever on a minority of patterns.
2020-10-01asdf: Replace weird loop syntaxThomas White
2020-09-30image_expand_frames: Report non-existent file properlyThomas White
2020-09-30indexamajig: Don't stop on first multi-frame file with no framesThomas White
2020-09-25cell_explorer: Improve progress counterThomas White
2020-09-25stream_make_index: s/Indexing/Scanning/Thomas White
Because it sounds strange and confusing to index the indexing results.
2020-09-24cell_explorer: Fix countingThomas White
2020-09-24GUI: Pass the real streams for the result to cell_explorerThomas White
2020-09-24Export find_result_by_nameThomas White
2020-09-24Generalise get_indexamajig_exe to get_crystfel_exeThomas White
2020-09-24cell_explorer: Accept multiple streams on command lineThomas White
2020-09-24Optionally avoid very new GTK features, for better backwards compatibilityThomas White
2020-09-24Add "*.h5" match typeThomas White
2020-09-24Show predicted but not integrated reflections in redThomas White
2020-09-24Fix old warning messageThomas White
2020-09-24Use cell_print in index_onceThomas White
2020-09-24Use integration radii in GUI indexingThomas White
2020-09-24Apply default unit scale factor only when value is from headersThomas White
Ugh.
2020-09-24GUI: Always update peaks, even if they're not being displayedThomas White
"Index this frame" needs to make sure that peaks have been found, regardless of whether they're being displayed or not.
2020-09-24SLURM: Avoid crash when batch system parameters are not setThomas White