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2019-03-11tests/transformation_check: Tidy up and be louderThomas White
2019-03-11cell_tool: Improve messagesThomas White
2019-03-11Add a commentThomas White
2019-03-11Single point of truth for matrix memory layoutThomas White
2019-03-11Fix typoThomas White
2019-03-11cell_tool: Add documentation for --transformThomas White
2019-03-11Add remaining centering types and finalise centering determinationThomas White
2019-03-11Automatic centering determination after transformationThomas White
2019-03-11cell_tool: Implement --cell-choicesThomas White
2019-03-11cell_tool: Add --transformThomas White
2019-03-11Initial centering determinationThomas White
2019-03-11More tidying up of cell comparisonThomas White
2019-03-11Find the best cell match, not just the first oneThomas White
2019-03-11Tidy up cell comparisonThomas White
2019-03-11Keep track of the "un-centering" matrix, as well as the "centering"Thomas White
This makes it easy to reverse the transformation, if required, which it is when comparing centered cells.
2019-03-11Add rtnl_mtx_identity()Thomas White
2019-03-11New way of doing cell comparisons, similar to match_cell()Thomas White
2019-03-11Fix tolerances (again)Thomas White
2019-03-11Consider fractional cell lengths during comparisonThomas White
This is WAY too slow. Need another algorithm.
2019-03-11cell_tool --find-ambi: Work without -yThomas White
It's not super-helpful, but the manual say it works, so...
2019-03-11Better handling of multiple symop errorThomas White
2019-03-11Implement parse_symmetry_operationsThomas White
2019-03-11Be clear about whether functions need rational or integer transformationsThomas White
2019-03-11Add rtnl_mtx_det() and rtnl_mtx_mult()Thomas White
2019-03-11Symmetry operation parser using Flex/BisonThomas White
2019-03-11Add new rational number libraryThomas White
2019-03-11Use IntegerMatrix for all unit cell transformationsThomas White
Get rid of UnitCellTransformation, a thin wrapper which didn't do anything.
2019-03-11get_hkl --reindex: Check that the user provides only one reindexing operationThomas White
2019-03-11Simplify the output of cell_print()Thomas White
2019-03-11cell_tool --rings: Add --highresThomas White
2019-03-11cell_tool: Fix length tolerance unitsThomas White
2019-03-11Change horribly confusing names of unit cell comparison functionsThomas White
cells_are_similar -> compare_cell_parameters_and_orientation compare_cells -> compare_reindexed_cell_parameters_and_orientation cell_tool.c:cells_the_same -> cellutils.c:compare_cell_parameters All comparisons now done in real space, checking that centering is the same, and without uncentering anything.
2019-03-11cell_tool: Don't uncenter cells before comparisonThomas White
2019-03-11cell_tool: Check --tolerance has the right number of commasThomas White
2019-03-11Don't use within_tolerance for anglesThomas White
2019-03-11Remove cells_are_similar() from APIThomas White
There are two functions with this name. Avoid confusion.
2019-03-11cell_tool: Add --compare (doesn't seem to work yet for some reason)Thomas White
2019-03-11Fix tolerancesThomas White
2019-03-11cell_tool: Improve option processingThomas White
2019-03-11Show the actual number of ordersThomas White
2019-03-11cell_tool: Use libcrystfel cells_are_similar() functionThomas White
2019-03-11cell_tool: Add --ringsThomas White
2019-03-11cell_tool --uncenter: Write unit cell to fileThomas White
2019-03-11cell_tool: Add --uncenterThomas White
2019-03-11Initial cell_tool (implementing find_ambi only)Thomas White
2019-03-07indexamajig: Status message improvementsThomas White
1. Show the number of hits 2. Keep producing updates while the last patterns are being processed 3. Don't duplicate the code for displaying the status messages
2019-03-07Remove old debug messageThomas White
2019-03-06indexamajig: Rename --min-gradient to --min-squared-gradientThomas White
The eventual aim of this is to deprecate the "--min-gradient" option, resolving the long-standing confusion about whether this option is the gradient or the squared gradient.
2019-03-06turbo-index-slurm: Comment out --nice valueThomas White
It's not needed as long as the queue implements proper fair sharing between users.
2019-03-05check-{near-bragg,peak-detection}: Give better errorsThomas White
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