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2019-03-12Get rid of two unused functionsThomas White
2019-03-12TakeTwo: Restore correct matrix multiplication for solutionThomas White
2019-03-11TakeTwo: take change in IntegerMatrix notation into accountThomas White
2019-03-11Remove commented codeThomas White
2019-03-11Get rid of cell_transform_gsl_reciprocal()Thomas White
It's confusing to have matrices acting on both real and reciprocal vectors. Let's standardise instead on transformations always applying to real-space cells. It was only used in one place.
2019-03-11Change matrix notation to match ITA chapter 5.1Thomas White
2019-03-11tests/transformation_check: Tidy up and be louderThomas White
2019-03-11cell_tool: Improve messagesThomas White
2019-03-11Add a commentThomas White
2019-03-11Single point of truth for matrix memory layoutThomas White
2019-03-11Fix typoThomas White
2019-03-11cell_tool: Add documentation for --transformThomas White
2019-03-11Add remaining centering types and finalise centering determinationThomas White
2019-03-11Automatic centering determination after transformationThomas White
2019-03-11cell_tool: Implement --cell-choicesThomas White
2019-03-11cell_tool: Add --transformThomas White
2019-03-11Initial centering determinationThomas White
2019-03-11More tidying up of cell comparisonThomas White
2019-03-11Find the best cell match, not just the first oneThomas White
2019-03-11Tidy up cell comparisonThomas White
2019-03-11Keep track of the "un-centering" matrix, as well as the "centering"Thomas White
This makes it easy to reverse the transformation, if required, which it is when comparing centered cells.
2019-03-11Add rtnl_mtx_identity()Thomas White
2019-03-11New way of doing cell comparisons, similar to match_cell()Thomas White
2019-03-11Fix tolerances (again)Thomas White
2019-03-11Consider fractional cell lengths during comparisonThomas White
This is WAY too slow. Need another algorithm.
2019-03-11cell_tool --find-ambi: Work without -yThomas White
It's not super-helpful, but the manual say it works, so...
2019-03-11Better handling of multiple symop errorThomas White
2019-03-11Implement parse_symmetry_operationsThomas White
2019-03-11Be clear about whether functions need rational or integer transformationsThomas White
2019-03-11Add rtnl_mtx_det() and rtnl_mtx_mult()Thomas White
2019-03-11Symmetry operation parser using Flex/BisonThomas White
2019-03-11Add new rational number libraryThomas White
2019-03-11Use IntegerMatrix for all unit cell transformationsThomas White
Get rid of UnitCellTransformation, a thin wrapper which didn't do anything.
2019-03-11get_hkl --reindex: Check that the user provides only one reindexing operationThomas White
2019-03-11Simplify the output of cell_print()Thomas White
2019-03-11cell_tool --rings: Add --highresThomas White
2019-03-11cell_tool: Fix length tolerance unitsThomas White
2019-03-11Change horribly confusing names of unit cell comparison functionsThomas White
cells_are_similar -> compare_cell_parameters_and_orientation compare_cells -> compare_reindexed_cell_parameters_and_orientation cell_tool.c:cells_the_same -> cellutils.c:compare_cell_parameters All comparisons now done in real space, checking that centering is the same, and without uncentering anything.
2019-03-11cell_tool: Don't uncenter cells before comparisonThomas White
2019-03-11cell_tool: Check --tolerance has the right number of commasThomas White
2019-03-11Don't use within_tolerance for anglesThomas White
2019-03-11Remove cells_are_similar() from APIThomas White
There are two functions with this name. Avoid confusion.
2019-03-11cell_tool: Add --compare (doesn't seem to work yet for some reason)Thomas White
2019-03-11Fix tolerancesThomas White
2019-03-11cell_tool: Improve option processingThomas White
2019-03-11Show the actual number of ordersThomas White
2019-03-11cell_tool: Use libcrystfel cells_are_similar() functionThomas White
2019-03-11cell_tool: Add --ringsThomas White
2019-03-11cell_tool --uncenter: Write unit cell to fileThomas White
2019-03-11cell_tool: Add --uncenterThomas White
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