CrystFEL - Data processing for serial crystallography

Age	Commit message (Collapse)	Author
2018-03-12	Remove autotools	Thomas White

2018-02-27	indexamajig: Add --overpredict	Thomas White

2018-02-08	Changed the naming of felix options and variables to make them more obvious.	Kenneth R. Beyerlein

2017-12-12	indexamajig: Add --serial-offset	Thomas White

2017-10-27	Merge branch 'tom/simpler_felix'	Thomas White

2017-10-19	Add read_reflections_2() to API	Thomas White
	New version for reading the symmetry as well
2017-10-19	Remove read_reflections_from_file() from API	Thomas White
	See c0ce8fb4 for the rationale behind this.
2017-10-12	indexamajig: Simplify Felix options	Thomas White

2017-10-12	Remove write_reflections_to_file() from API	Thomas White
	It's there because it used to be used to write the reflections into the stream. Therefore there was a need for a function to write a bare list of reflections to a file, with no headers. Since then, the stream and merged reflection file formats have diverged, so there's no use for this other than to confuse people.
2017-10-02	indexamajig(1): Add --temp-dir	Thomas White

2017-10-02	indexamajig: Add missing documentation for --check-peaks	Thomas White

2017-09-21	Group the options in indexamajig(1) according to processing stage	Thomas White

2017-09-21	Update man page for new indexing options	Thomas White

2017-09-15	hdfsee(1): Document --rigid-groups	Thomas White

2017-07-24	This is CrystFEL 0.6.30.6.3	Thomas White

2017-07-24	Update docs	Thomas White

2017-07-20	indexamajig(1): Give default values for TakeTwo options	Thomas White

2017-07-07	Documentation for TakeTwo indexamajig options	Thomas White

2017-07-05	Update docs	Thomas White

2017-07-05	Rearrange quaternion declarations so that gtk-doc can cope	Thomas White
	The utils file contains two gtk-doc sections, "utils" and "quaternion", with a change of section halfway through. It seems that gtk-doc doesn't like it if the declarations are all mixed together.
2017-06-27	indexamajig: Add --no-non-hits-in-stream	Thomas White

2017-03-31	Offset peak locations from HDF5 or CXI files by 0.5,0.5	Thomas White
	CrystFEL considers all peak locations to be distances from the corner of the detector panel, in pixel units, consistent with its description of detector geometry. In contrast, Cheetah considers the peak locations to be pixel indices in the data array. Therefore, a half-pixel offset is needed when importing the peak lists. For users who need the old behaviour, this commit adds a new option indexamajig --no-half-pixel-shift to deactivate this offset.
2017-03-24	Merge branch 'valerio/peakfinder8'	Thomas White

2017-03-13	Added information about max_num_peaks to documentation	Valerio Mariani

2017-03-10	Added peakfinder8 information to the indexamajig man page	Valerio Mariani

2017-03-08	compare_hkl: Fix combination of sigma(I) values for d1sig and d2sig	Thomas White

2017-03-08	compare_hkl: Fix documentation	Thomas White

2017-03-08	Add example Eiger geometry file	Thomas White

2017-02-17	Update docs (add funding acknowledgements)	Thomas White

2016-11-07	render_hkl: Show max value, and improve documentation for --scale-top	Thomas White

2016-08-11	Take rail direction as a vector rather than individual x,y,z values	Thomas White
	Just to make it more consistent with fs/ss directions
2016-08-10	Allow peak table location to be given in geometry file	Thomas White

2016-08-09	Update manual	Thomas White

2016-04-12	Merge branch 'tom/testing'	Thomas White

2016-04-01	Add adu_per_photon (distinct from adu_per_eV)	Thomas White

2016-03-31	Handle placeholders in --hdf5-peaks	Thomas White

2016-03-21	This is CrystFEL 0.6.20.6.2	Thomas White

2016-03-18	Update docs	Thomas White

2016-03-18	Update docs	Thomas White

2016-03-01	indexamajig: Wall clock profiling	Thomas White

2016-02-12	Update manual	Thomas White

2016-02-05	Update docs	Thomas White

2016-01-08	Make indexing "retry" and "multi" optional	Thomas White

2015-12-17	hdfsee: Update docs	Thomas White

2015-12-15	Update paper reference in geoptimiser man page	Thomas White

2015-11-19	partialator: Set default push-res to infinity	Thomas White
	Not needed now that the scaling is more stable
2015-11-18	Documentation fixes	Thomas White

2015-11-17	Update docs	Thomas White

2015-11-13	Fix bug in process_hkl documentation	Thomas White

2015-10-27	Update docs for pattern_sim	Thomas White