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path: root/libcrystfel/src/integration.c
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2014-08-14Apply overlap mask to BM_IG pixels as wellThomas White
... because everything except BM_BH is used for centering.
2014-08-14Factorise reflection prediction and do it before creating the maskThomas White
2014-08-13Fix handling of overlapping reflectionsThomas White
2014-08-12Clean up a compiler warning when compiling without cursesThomas White
2014-08-11Take overlaps into account during integrationThomas White
2014-07-24Suspend indexing statistics while --int-diag is displayingThomas White
2014-06-25Pass the partiality model down from the API levelThomas White
2014-04-09Avoid breaking API with integrate_all()Thomas White
2014-04-08indexamajig: Add --push-resThomas White
2014-04-08Remove unused variableThomas White
2014-04-01Fix resolution cutoff so that it (apparently) worksThomas White
2014-03-28Require at least two bright pixels in integration box before moving centreThomas White
2014-03-21FormattingThomas White
2014-03-03Remove silly testThomas White
2014-03-03Test for brightest pixel after checking for closer reciprocal lattice pointThomas White
2014-03-03Include background and peak height in streamThomas White
2014-02-13Fix previous commitThomas White
2014-02-13Don't proceed with integration if no suitable reference reflections were foundThomas White
2013-12-06Count implausible reflections when integrating with prof2dThomas White
2013-12-05Additions to show_peak_box()Thomas White
2013-11-29indexamajig: Add --int-diag=strongThomas White
2013-11-29Avoid '1 implausibly negative reflections'Thomas White
2013-11-28Add UNUSED to a couple of functionsThomas White
2013-11-25Don't refine rigid groupsThomas White
2013-11-25Fix centeringThomas White
2013-11-24show_peak_box(): Add indices and tidy upThomas White
2013-11-24Set red=0 if BG not OKThomas White
2013-11-24Break out setup_profile_boxes()Thomas White
2013-11-24Break out integrate_prof2d_once()Thomas White
2013-11-23indexamajig: Add --int-diag=implausibleThomas White
2013-11-23Don't call resolution_cutoff()Thomas White
2013-11-23Add --int-diag=negativeThomas White
2013-11-23More fixes for --int-diagThomas White
2013-11-23indexamajig: Add --int-diagThomas White
2013-11-23FormattingThomas White
2013-11-23Move debugging outputThomas White
2013-11-23Fix mean_var_area()Thomas White
2013-11-23Improve show_peak_box() (and its use)Thomas White
2013-11-23Break off integrate_rings_once()Thomas White
2013-10-10Avoid calling fit_bg() on a bad box (because it segfaults)Thomas White
2013-10-09Remove old resolution estimation codeThomas White
2013-10-09Center peaks on maximum brightness pixel over 3*backgroundThomas White
2013-10-09Integration verbosity fixesThomas White
2013-10-09Set matrix components to zero before calculating bg matrix integralsThomas White
2013-09-05configure: check for curses, and compile even if it's not availableThomas White
2013-08-12Improve show_matrix_eqn()Thomas White
2013-07-04Mark estimate_resolution() and estimate_mosaicity() as unusedThomas White
2013-06-25Restore sigma calculation with --integration=ringsThomas White
2013-06-21Reduce verbosityThomas White
2013-06-21Use tentative_intensity() (with fitted background) for "rings"Thomas White
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