CrystFEL - Data processing for serial crystallography

Age	Commit message (Collapse)	Author
2014-02-13	Don't proceed with integration if no suitable reference reflections were found	Thomas White

2013-12-06	Count implausible reflections when integrating with prof2d	Thomas White

2013-12-05	Additions to show_peak_box()	Thomas White

2013-11-29	indexamajig: Add --int-diag=strong	Thomas White

2013-11-29	Avoid '1 implausibly negative reflections'	Thomas White

2013-11-28	Add UNUSED to a couple of functions	Thomas White

2013-11-25	Don't refine rigid groups	Thomas White

2013-11-25	Fix centering	Thomas White

2013-11-24	show_peak_box(): Add indices and tidy up	Thomas White

2013-11-24	Set red=0 if BG not OK	Thomas White

2013-11-24	Break out setup_profile_boxes()	Thomas White

2013-11-24	Break out integrate_prof2d_once()	Thomas White

2013-11-23	indexamajig: Add --int-diag=implausible	Thomas White

2013-11-23	Don't call resolution_cutoff()	Thomas White

2013-11-23	Add --int-diag=negative	Thomas White

2013-11-23	More fixes for --int-diag	Thomas White

2013-11-23	indexamajig: Add --int-diag	Thomas White

2013-11-23	Formatting	Thomas White

2013-11-23	Move debugging output	Thomas White

2013-11-23	Fix mean_var_area()	Thomas White

2013-11-23	Improve show_peak_box() (and its use)	Thomas White

2013-11-23	Break off integrate_rings_once()	Thomas White

2013-10-10	Avoid calling fit_bg() on a bad box (because it segfaults)	Thomas White

2013-10-09	Remove old resolution estimation code	Thomas White

2013-10-09	Center peaks on maximum brightness pixel over 3*background	Thomas White

2013-10-09	Integration verbosity fixes	Thomas White

2013-10-09	Set matrix components to zero before calculating bg matrix integrals	Thomas White

2013-09-05	configure: check for curses, and compile even if it's not available	Thomas White

2013-08-12	Improve show_matrix_eqn()	Thomas White

2013-07-04	Mark estimate_resolution() and estimate_mosaicity() as unused	Thomas White

2013-06-25	Restore sigma calculation with --integration=rings	Thomas White

2013-06-21	Reduce verbosity	Thomas White

2013-06-21	Use tentative_intensity() (with fitted background) for "rings"	Thomas White

2013-06-21	Peak integrals are per box	Thomas White

2013-06-20	show_peak_box() and show_reference_profile(): refresh() before getch()	Thomas White

2013-06-10	Add comment	Thomas White

2013-06-02	Fix RG delta output, and write only if actually calibrated	Thomas White

2013-06-02	Refine rigid group positions and orientations	Thomas White

2013-06-02	Rigid group stuff	Thomas White

2013-06-01	Fix lying comment	Thomas White

2013-06-01	Extreme fussiness	Thomas White

2013-06-01	Fix memory leaks	Thomas White

2013-06-01	Calculate reference profile for all pixels in peak box	Thomas White
	This makes no difference to the actual profile fitting, which only uses the peak region. It just makes it easier to see if the reference profile is sensible or not.
2013-06-01	More space in reference profile display	Thomas White

2013-06-01	prof2d: Use the same mask as rings	Thomas White

2013-06-01	Don't update integrated location from centroid after integration	Thomas White

2013-06-01	Fix rounding of pixel coordinates	Thomas White

2013-05-31	Remove duplicate (and incorrect) box boundary check	Thomas White

2013-05-31	Clear screen before showing new peak box or reference profile	Thomas White

2013-05-31	Initialise reference_den to zero	Thomas White