CrystFEL - Data processing for serial crystallography

Age	Commit message (Collapse)	Author
2016-01-06	search_peaks_in_panel(): Fix iteration bounds (again)	Thomas White

2015-12-18	Allow peak check to pass just by accounting for more than 5 peaks	Thomas White
	The "old" criterion is still allowed for a pass, but would filter out multi-lattice hits.
2015-12-17	Clean up unused code	Thomas White

2015-11-06	Fix iteration bounds for peak search	Thomas White
	It was out by one because of some leftover characters from the previous version.
2015-10-06	Fussiness	Thomas White

2015-10-05	search_peaks() / integrate_peak(): Remove image->data	Thomas White

2014-09-22	Beam file removal, part I	Thomas White

2014-09-02	integrate_peak(): Revert use of image->dp	Thomas White

2014-08-13	Remove old bad region tests and use dp instead of data for integration of peaks	Thomas White

2014-08-13	Respect all bad pixels during peak detection	Thomas White
	Not just no_index panels and bad regions
2014-08-13	Remove integrate_peak() from the API	Thomas White
	Good riddance. One of my least favourite routines.
2014-08-11	Take overlaps into account during integration	Thomas White

2014-07-24	Fixes closest feature detection bug	Valerio Mariani

2014-03-28	validate_peaks(): Count saturated peaks only if they are being rejected	Thomas White

2014-03-28	integrate_peak(): Useful return codes	Thomas White

2014-03-26	indexamajig: Don't check SNR with --peaks=hdf5 unless given --check-hdf5-snr	Thomas White

2013-08-20	Re-order peak tests	Thomas White
	The old version led to a curious situation where the number of saturated peaks could be much greater than the number of peaks, even without --no-use-saturated.
2013-06-28	Don't check max_adu during gradient search if --use-saturated is given	Thomas White

2013-06-26	Track number of rejected saturated peaks	Thomas White

2013-05-27	Initial integration stuff	Thomas White

2013-04-24	Add docs/stream-format.txt and clarify count of saturated reflections	Thomas White

2013-04-16	Restore immediate rejection of pixels above max_adu	Thomas White

2013-04-16	Remove "use_saturated" argument to integrate_peak()	Thomas White
	There are no side-effects to setting it either way, and the caller can just set saturated=NULL or ignore the result.
2013-02-09	Add '--res-cutoff'	Thomas White

2013-02-08	Saturation counting fixes	Thomas White

2013-02-08	Count saturated peaks and record in the file	Thomas White

2013-02-05	Fixes for indexing pipeline	Thomas White

2013-02-04	Indexing stuff	Thomas White

2013-01-30	Peak integration changes	Thomas White

2013-01-04	integrate_peak(): check that 'saturated' isn't NULL before using	Thomas White
	Fixes a segfault
2012-12-03	Treat SNR=nan (=0/0) as below any SNR threshold	Thomas White

2012-11-30	Fix uninitialised saturation flag	Thomas White

2012-11-29	indexamajig: Add --use-saturated	Thomas White

2012-11-29	Suppress "Couldn't sort reflections" message when there are no predicted peaks	Thomas White

2012-11-29	indexamajig: Add --integrate-saturated	Thomas White

2012-10-22	indexamajig: Validate (re-integrate, check bad regions etc) peaks from HDF5	Thomas White

2012-10-22	Fix (still) broken bad rectangle test	Thomas White

2012-10-21	indexamajig: Record number of saturated reflections in stream	Thomas White

2012-10-20	integrate_peak(): Restore check for bad region	Thomas White
	This fixes a regression introduced by ad2c84d0, predating the initial CrystFEL release.
2012-10-02	Use the correct panel number	Thomas White

2012-10-02	Move unit cell utility stuff to separate module	Thomas White

2012-10-02	Factorise background mask	Thomas White
	This fixes a speed regression introduced by dca1938a.
2012-10-02	Fix the other exit condition from integrate_peak()	Thomas White
	This REALLY fixes a significant data quality regression introduced by f668e3b3 (21st June 2012)
2012-10-01	Fix exit condition from integrate_peak()	Thomas White
	This fixes a significant data quality regression introduced by f668e3b3 (21st June 2012)
2012-10-01	make_bgMask() does not need to know the peak coordinates (any more)	Thomas White
	Also, s/ir_in/ir_inn/
2012-07-30	Immediately reject pixels above max_adu in the peak search	Thomas White
	This leads to a big improvement in speed when (ab)using max_adu for gaps in the detector.
2012-07-11	More memory leaks	Thomas White

2012-07-11	Fix a load of memory leaks	Thomas White

2012-06-28	Warn user if any peaks were badrow culled	Thomas White

2012-06-28	Don't lie about the number of badrow culled peaks	Thomas White