aboutsummaryrefslogtreecommitdiff
path: root/libcrystfel/src
AgeCommit message (Collapse)Author
2020-05-12Add missing newline in error messageThomas White
2020-05-12Fix silly mistake in cell reductionThomas White
2020-04-03Break down hdfile_get_string_value()Thomas White
There are just too many cases here. Variable/fixed length, array of either of those, with/without event structure. And that's just for real strings (not numbers that will be converted to strings). For now, I think the only unhandled case is an array of variable length strings. We can fix this when/if one turns up in the wild.
2020-03-31hdfile_get_string_value: Handle arrays of fixed length stringsThomas White
2020-03-31Catch NULL event in make_dataspacesThomas White
2020-03-31Improve error message in hdfile_get_string_value()Thomas White
2020-03-16hdfile_get_string_value: Handle arrays of variable length stringsThomas White
2020-03-13uncenter_cell(): Convert R to PThomas White
Otherwise, the cell comparison doesn't recognise the cells as the same, breaking indexing with an R reference cell. Unfortunately, the resulting cell after comparison by compare_r_c_p still comes out as P, but that doesn't seem like a big loss. To get it strictly correct, we'd need some way of tracking through the information that the cell got "uncentered" from R to P, even though the matrix is an identity.
2020-03-09integrate_rings_once: Handle case where reflection is negative by < 1 photonThomas White
2020-03-04add option -pinkIndexer-max-refinement-disbalanceYaroslav Gevorkov
2020-02-28hdfile_get_value(): Check that ev->dim_length > 0 before looking in dim_entriesThomas White
2020-02-11Fix comment typoThomas White
2020-02-11Don't use gzbuffer if it's not availableThomas White
Enables compatability with zlib < 1.2.3.5
2020-02-07add error message for too small reflection radius when using electronsYaroslav Gevorkov
2020-02-07fix error message for photon_energy not known at indexer_prepareYaroslav Gevorkov
2020-02-04Handle CRLF line terminators in geometry filesThomas White
This was broken by d62367db8fee57, which was some enabling work for reading geometry info from streams.
2020-01-10Mass update of copyright datesThomas White
2019-12-13pair_peaks: Don't attempt to pair 000Thomas White
Normally the beam centre is masked out or not on the detector. However, when it is, pairing with 000 causes gradients to come out as NaN and the prediction refinement to fail.
2019-11-18PinkIndexer documentationYaroslav Gevorkov
2019-11-15Add partiality model GGPMWolfgang Brehm
2019-11-13fix long variable names in argp_optionYaroslav Gevorkov
2019-11-13rename "overriden" to "custom"Yaroslav Gevorkov
2019-11-13catch input errorYaroslav Gevorkov
2019-11-13add option --pinkIndexer-override-visible-energy-rangeYaroslav Gevorkov
2019-11-13Fix peak check logic for multiple crystalsThomas White
It seems that the code wasn't properly updated when multi-crystal indexing was introducted. This "continue" statement didn't do anything.
2019-11-05bug fix for standard bandwidth in pinkIndexerYaroslav Gevorkov
2019-11-05bug fix in Ewald sphere width calculationYaroslav Gevorkov
2019-10-29add "override" beam options to pinkIndexerYaroslav Gevorkov
2019-10-24polarisation_correction: Use symmetric indicesThomas White
2019-10-24polarisation_correction: Scale the sigma as wellThomas White
2019-10-22xds: Fix handedness of unit cellThomas White
Previously, it was wired to give left handed cells.
2019-10-22Add more warningsThomas White
2019-10-22Add some warnings and assertionsThomas White
2019-10-22reduce_g6: Fix sign criterion for step 3Thomas White
2019-10-11Copy target cell's lattice type and unique axis into cell from indexing, ↵Thomas White
after comparison
2019-09-23Get rid of "rescut" integration flagThomas White
Its behaviour is 100% covered by the push-res parameter, which can be set to infinity for no cutoff.
2019-09-23Remove private option structures from iargsThomas White
2019-09-23Merge branch 'tom/pinkindexer'Thomas White
2019-09-20Delegate option processing for indexing methodsThomas White
Involves switching from getopt_long to argp. A big improvement!
2019-09-17Add warning if reflections could not be integrated (e.g. due to overlap)Thomas White
2019-09-16Fix cell comparison logicThomas White
2019-09-12Fix sign of zl comparisonThomas White
2019-09-12Restore default bandwidth (if not specified in geometry file)Thomas White
2019-09-12Fix logicThomas White
2019-09-12Force --no-check-peaks and --no-refine if pinkIndexer is used, and add a warningThomas White
2019-09-12Increase indexing timeout when using pinkIndexerThomas White
2019-09-12Add indexing_methods() to examine the actual list of methodsThomas White
2019-09-12Remove message directing to old optionThomas White
2019-09-12Avoid duplication of beam and detector parameters for pinkIndexerThomas White
2019-09-12bug fix: asking for detector distance != 0 instad of beamBandwidth != 0Yaroslav Gevorkov
generated by cgit v1.2.3 (git 2.25.1) at 2024-06-16 06:09:57 +0000