| Age | Commit message (Collapse) | Author | |
|---|---|---|---|
| 2018-01-19 | scripts/truncate-stream: Fix missing crystal start marker | Thomas White | |
| Affects chunks with multiple crystals. Previously, the crystal start marker for the second and subsequent crystals was missed. | |||
| 2017-12-12 | scripts/turbo-index-slurm: Use --serial-start | Thomas White | |
| 2017-12-07 | scripts/truncate_stream: Accept input on stdin | Thomas White | |
| 2017-11-23 | scripts/peakogram-stream: Show "predicted reflections" instead of "peaks" | Thomas White | |
| 2017-11-14 | scripts/peakogram-stream: Change status message to avoid confusion | Thomas White | |
| It uses predicted reflections, not found peaks | |||
| 2017-11-14 | scripts/peakogram-stream: Handle "-" for input | Thomas White | |
| 2017-11-14 | scripts/detector-shift: Handle "-" for input | Thomas White | |
| 2017-10-19 | peakogram-stream: Fix list indices for beta and gamma angles | Thomas White | |
| Whoops! | |||
| 2017-10-19 | peakogram-stream: Fix included peaks | Thomas White | |
| The min and max values are specified inclusively. | |||
| 2017-10-19 | peakogram-stream: Show the line and cell parameters when the maths goes wrong | Thomas White | |
| 2017-10-18 | move-entire-detector: Fix output filename | Thomas White | |
| 2017-10-18 | New version of sum-peaks | Thomas White | |
| This version gets the array dimensions automatically. However, it still assumes the data is "slabby". | |||
| 2017-07-25 | create-mtz: Tidy up create-mtz.temp.hkl file | Thomas White | |
| 2017-07-25 | Fix typo in author name | Thomas White | |
| Whoops. Sorry Suzuki-san! | |||
| 2017-05-17 | Actually add scripts/sum-peaks | Thomas White | |
| 2017-05-12 | Make all Python scripts compatible with Python 2 and 3 | Thomas White | |
| It would be nice to upgrade completely to Python 3, but this may create problems at SLAC because psana only supports Python 2 (Python 3 is available, but means that users have to jump through hoops to run a simple CrystFEL script). None of our scripts do anything complicated, so they can all be compatible with both so far. If anyone adds a script which requires a particular version, make sure to specify the version in the first line, consistent with PEP 394. | |||
| 2017-03-08 | Add SLURM version of turbo-index script | Thomas White | |
| 2016-10-14 | Add scripts/peakogram-stream | Thomas White | |
| 2016-08-16 | scripts/move-entire-detector: Use argparse instead of optparse | Thomas White | |
| The main motivation for this was that argparse handles positional arguments which start with minus signs, which is the behaviour we prefer here. | |||
| 2016-08-16 | scripts/create-mtz: Update to handle unknown number of lines after end marker | Thomas White | |
| 2016-08-03 | Add scripts/move-entire-detector and scripts/split-by-mask | Thomas White | |
| 2016-03-22 | scripts/fg-graph: Remove "monochrome" | Thomas White | |
| Not sure what this is doing here, or why it wasn't noticed before... | |||
| 2016-03-22 | scripts/detector-shift: Show a 'heat map' histogram of detector offset | Thomas White | |
| 2016-03-22 | scripts/detector-shift: Handle panel resolutions correctly | Thomas White | |
| 2016-03-21 | Make scripts/gaincal-to-saturation-map executable | Thomas White | |
| 2016-03-18 | Add scripts/gaincal-to-saturation-map | Thomas White | |
| 2016-03-01 | scripts/check-peak-detection: Initialise $event | Thomas White | |
| 2016-01-29 | Perform prediction refinement straight after indexing | Thomas White | |
| This allows indexing to be attempted again (either a new method or with "retry") if the prediction refinement fails, increasing overall indexing rate. Side-effect: there are some hoops which would need to be jumped through to store the profile radius before refinement and hence enable scripts/plot-predict-refine to work. For now, we'll ignore this as it's clear that the prediction refinement is working. | |||
| 2016-01-16 | scripts/ave-resolution: Show histogram of resolution values | Thomas White | |
| 2015-12-03 | scripts/turbo-index: Add missing "done" | Thomas White | |
| 2015-10-15 | Improved scripts/plot-predict-refine | Thomas White | |
| 2015-09-22 | scripts/peak-intensity: re-write and update for latest format | Thomas White | |
| 2015-07-21 | Add scripts/turbo-index | Thomas White | |
| 2015-06-25 | scripts/plot-predict-refine: Fix pointless line | Thomas White | |
| 2015-04-28 | Remove camera length refinement | Thomas White | |
| ...because it very often seems to cause problems. | |||
| 2015-04-28 | detector-shift: Improve | Thomas White | |
| 2015-04-20 | Add a simple rejection criterion to the prediction refinement | Thomas White | |
| 2015-04-20 | Improve and fix scripts/detector-shift | Thomas White | |
| Because of a bug in the regexp, it did not apply the shifts to all panels. | |||
| 2015-04-20 | plot-detector-shift: More improvements | Thomas White | |
| 2015-04-20 | scripts/plot-detector-shift: Fix aspect ratio, general improvements | Thomas White | |
| 2015-04-20 | scripts/plot-detector-shift: Remove silly vertical line | Thomas White | |
| 2015-04-20 | Add new scripts for detector shifts | Thomas White | |
| 2015-04-20 | Add plot-predict-refine and plot-radius-resolution | Thomas White | |
| 2015-04-20 | scripts/indexed-filenames: Keep track of event IDs as well, if necessary | Thomas White | |
| 2015-04-20 | scripts/compare-hkl.gp: Improve | Thomas White | |
| 2015-04-01 | Add scripts/crystal-frame-number | Thomas White | |
| 2015-04-01 | check-{peak-detection,near-bragg}: add ability to skip events | Thomas White | |
| 2015-04-01 | Add scripts/ave-resolution | Thomas White | |
| 2014-12-14 | Fix chekc-near-bragg (again) | Thomas White | |
| 2014-12-14 | Fix check-near-bragg | Thomas White | |
 |
index : CrystFEL | |
| Data processing for serial crystallography | Thomas White |
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