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path: root/src/indexamajig.c
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2015-07-23indexamajig: Peak detection method must be parsed before checking peak pathThomas White
2015-07-21indexamajig: Tidy up option handlingThomas White
2015-07-13Slow down the status updatesThomas White
2015-06-25Tidy up some small leaks and memory bugsThomas White
2015-06-17Use a POSIX semaphore for synchronising terminal access during indexingThomas White
Nice side-effect: indexamajig -j and --int-diag can now be used together
2015-04-20indexamajig: Add --no-refineThomas White
2015-02-20indexamajig: Intelligently set default peak pathThomas White
2015-02-16indexamajig: --peaks=cxi instead of --peaks=hdf5 --cxi-hdf5-peaksThomas White
2015-02-12indexamajig: Add --fix-{profile-radius,bandwidth,divergence}Thomas White
2015-02-05Remove --element option from inxexamajigValerio Mariani
2014-12-14FussinessThomas White
2014-12-14Read cxidb peak infoValerio Mariani
2014-11-09Add warnings to everything which used to take a beam fileThomas White
2014-10-27indexamajig: Warning if --push-res is used without rescutThomas White
2014-10-24indexamajig: Fix --versionThomas White
2014-10-23Fix an error messageThomas White
2014-10-23Fix a load of memory leaksThomas White
2014-09-22Beam file removal, part IThomas White
2014-09-19Introduce CrystFEL unit cell filesThomas White
2014-08-13indexamajig: Add --highresThomas White
2014-07-21Copy geometry file into streamValerio Mariani
2014-06-20indexamajig: Add --peak-radiusThomas White
2014-05-22Rationalise and document stream "open for write" functionsThomas White
A nice side-effect is that streams now only have one set of headers
2014-05-22Fix permissions of newly created stream filesThomas White
The user's umask should prevent all the streams from being (eg) world writable.
2014-05-21Added reporting of version number to all program and stream fileValerio Mariani
2014-05-08Strip out the "prepare_filename" rubbishThomas White
2014-04-09Remove vestigial "closer-peak" optionThomas White
2014-04-08indexamajig: Add --push-resThomas White
2014-03-26indexamajig: Don't check SNR with --peaks=hdf5 unless given --check-hdf5-snrThomas White
2014-03-03Add things to stream if they were mentioned in beam or geom, and remove ↵Thomas White
clen_ entries
2014-02-02indexamajig: Make --integrate-saturated work againThomas White
This option is provided for backwards compatibility
2013-11-29indexamajig: Add --int-diag=strongThomas White
2013-11-23indexamajig: Ignore -j if --int-cond is usedThomas White
2013-11-23indexamajig: Add --int-diag=implausibleThomas White
2013-11-23Add --int-diag=negativeThomas White
2013-11-23More fixes for --int-diagThomas White
2013-11-23indexamajig: Add --int-diagThomas White
2013-10-10indexamajig: Add --temp-dirThomas White
2013-06-10indexamajig: Fix default integration methodThomas White
2013-06-06Set default integration method to "rings-nocen"Thomas White
Applying the Principle of Least Surprise before merging to master. Previously, it was rings-cen.
2013-06-01Fix memory leak (properly)Thomas White
2013-06-01Fix memory leaksThomas White
2013-05-30Update docsThomas White
2013-05-30indexamajig: Get rid of --use-saturated, because it's now the defaultThomas White
2013-05-30indexamajig: Get rid of --min-integration-snrThomas White
This functionality belongs in process_hkl.
2013-05-28--use-saturated should be the defaultThomas White
2013-05-27Initial integration stuffThomas White
2013-03-11Get rid of "--filter-cm"Thomas White
This was completely specific to pnCCDs, and not even properly general to the different configurations there.
2013-03-11indexamajig: Add --median-filterThomas White
2013-03-01indexamajig: Fix default behaviour for --integrate-saturatedThomas White
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