Age | Commit message (Collapse) | Author | |
---|---|---|---|
2023-02-08 | indexamajig: Use static clen as --camera-length-estimate, if given | Thomas White | |
This makes it work the same way as --wavelength-estimate. | |||
2022-11-08 | indexamajig: Add --cell-parameters-only | Thomas White | |
2022-10-05 | Merge branch 'pf8_faster' | Thomas White | |
2022-09-22 | Add fast mode for peakfinder8 | Alexandra Tolstikova | |
2022-09-21 | asdf: Add fast mode | Alexandra Tolstikova | |
This adds an optional fast mode for asdf indexing, which is around 3 times faster with only a few percent lower success rate. | |||
2022-07-07 | indexamajig: --asapo-wait-for-stream doesn't require an argument | Thomas White | |
2022-07-07 | indexamajig: Make sure data format is initialised | Thomas White | |
2022-06-23 | indexamajig: Add --asapo-wait-for-stream | Thomas White | |
2022-06-22 | indexamajig: Wrap ZMQ parameters into separate structure | Thomas White | |
2022-06-22 | indexamajig: Wrap ASAP::O parameters up inside separate structure | Thomas White | |
2022-06-02 | indexamajig: Make all three input options mutually exclusive | Thomas White | |
2022-06-02 | indexamajig: Add --asapo-stream | Thomas White | |
2022-06-02 | Seedee deserialization | Thomas White | |
2022-06-02 | ASAP::O: Remove filesystem path | Thomas White | |
This is only really needed for offline processing. It's an added complication for now. Maybe we'll revisit it later and re-expose this, though. | |||
2022-06-02 | ASAP::O: Expose data source | Thomas White | |
2022-06-02 | indexamajig: Special cases for ASAP::O as for ZMQ | Thomas White | |
2022-06-02 | ASAP::O: Group ID stuff | Thomas White | |
2022-06-02 | ASAP::O guts | Thomas White | |
2022-06-02 | indexamajig: Put MsgPack peaks through validation procedure, like HDF5 | Thomas White | |
2022-05-31 | indexamajig: Fix JSON when not indexing/integrating | Thomas White | |
Fixes: https://gitlab.desy.de/thomas.white/crystfel/-/issues/68 | |||
2021-09-17 | indexamajig: Add --data-format | Thomas White | |
2021-07-21 | Reduce variable scope where possible | Thomas White | |
2021-07-14 | Make all the indexer-specific option structures non-opaque | Thomas White | |
Making them opaque seemed like a nice idea, because all the indexers could take care of their own command-line arguments. However, it doesn't work at all when indexing is run via the API. | |||
2021-05-11 | indexamajig: Put cell tolerances and pk/int radii into separate objects | Thomas White | |
Rationale: it makes the JSON structure a bit more logical, and enables things like the following: set_of_params_1.integration.radii == set_of_params_2.integration.radii params.peaksearch.radii == params.integration.radii Previously, these would have required multiple comparisons. | |||
2021-05-05 | indexamajig: Add --zmq-request | Thomas White | |
This (re-)adds the ability to get data via a request/reply socket. See afcb7b568947c for when it was removed. | |||
2021-05-05 | indexamajig: Add a missing break | Thomas White | |
This fixes --threshold when --zmq-subscribe is used. | |||
2021-04-30 | indexamajig: Fix an incorrect error message | Thomas White | |
2021-04-27 | indexamajig: Fix an error message | Thomas White | |
2021-04-23 | indexamajig: Add --zmq-subscribe | Thomas White | |
2021-04-21 | indexamajig: Replace --zmq-msgpack with --zmq-input | Thomas White | |
This removes some unnecessary work (getting the address from the file) and seems cleaner. | |||
2021-04-21 | indexamajig: Set indexing,integration=null if we are not indexing at all | Thomas White | |
2021-04-21 | Remove index_args->max_n_peaks | Thomas White | |
It's not used anywhere. | |||
2021-04-21 | indexamajig --harvest-file: Handle no cell or no indexing methods | Thomas White | |
2021-04-20 | indexamajig: Fix --no-image-data/--no-mask-data | Thomas White | |
2021-04-08 | indexamajig: Add a missing harvest parameter | Thomas White | |
2021-03-29 | indexamajig: Don't write harvest file if serial start is >1 | Thomas White | |
This will avoid multiple indexamajig processes from overwriting the others' files when running a batch job. | |||
2021-03-26 | indexamajig: Add --harvest-file | Thomas White | |
2021-03-25 | indexamajig: Add --camera-length-estimate | Thomas White | |
Unfortunately, PinkIndexer needs the real camera length for its centre refinement. Giving a fake value and scaling the resulting shift does not work - the indexing rate drops with even a small error. Ideally, this would work in the same way as --wavelength-estimate, by using a static value from the geometry file if it's given. However, this is rather complicated to implement because of the way all the units stuff is implemented. Therefore, this is left as an improvement for the future. | |||
2021-03-19 | FromFile indexer: Option processing | Thomas White | |
This give FromFile its own private command-lien option processing, like the other indexers. It removes the ability to auto-generate the solution filename, but I don't think there's a way to do that without breaking abstractions. | |||
2021-03-12 | Clean up after merge | Thomas White | |
2021-03-12 | Merge branch 'pascal/electrons' | Thomas White | |
2021-03-11 | indexamajig: Use static wavelength from DataTemplate as estimate | Thomas White | |
If the geometry file contains a literal wavelength, then let's use it. That's better than nagging the user for a --wavelength-estimate. | |||
2021-03-11 | indexamajig: Add --max-indexer-threads | Thomas White | |
This is a more general replacement for --pinkIndexer-thread-count. | |||
2021-03-11 | indexamajig: Remove misleading message | Thomas White | |
Spectrum file is currently not supported at all. Maybe later. | |||
2021-03-11 | PinkIndexer: Remove custom indexing checks | Thomas White | |
These conflict badly with CrystFEL's own checks, creating a horrible user and developer experience. Later, if we want to handle wide bandwidth beams, we will improve the central CrystFEL checks to support it. | |||
2021-03-11 | setup_indexing: Remove dtempl | Thomas White | |
There is absolutely nothing useful that an indexing algorithm can do with the opaque DataTemplate object. | |||
2021-03-11 | indexamajig: Add --wavelength-estimate | Thomas White | |
This is a more sensible non-indexer-specific and non-Xray-specific replacement for --pinkIndexer-override-photon-energy | |||
2021-03-05 | Mass update of copyright dates in source code comments | Thomas White | |
2020-10-26 | Label all uses of cell tolerances | Thomas White | |
I'm sick of fixing this same issue over and over again. New rule: any code handling unit cell tolerances MUST be labelled with details of units. | |||
2020-08-27 | indexamajig: Hide --hdf5-peaks | Thomas White | |
This option is no longer used, and generates a warning. The peak location comes in the geometry file instead. |