CrystFEL - Data processing for serial crystallography

Age	Commit message (Collapse)	Author
2012-02-22	Get rid of pattern_sim --near-bragg	Thomas White

2012-02-22	Banish find_projected_peaks()	Thomas White

2012-02-22	Make background subtraction optional	Thomas White

2012-02-22	Remove old reflections.h	Thomas White

2012-02-22	Remove all remaining PDB rendering stuff	Thomas White

2012-02-22	Update copyright dates	Thomas White

2012-02-22	Fussiness	Thomas White

2012-02-22	New stream writing	Thomas White

2012-02-22	First part of stream rework	Thomas White

2012-02-22	setup_gpu() does not need an image	Thomas White

2012-02-22	Remove water simulation stuff	Thomas White
	It's not really useful - our dominant background is from elsewhere
2012-02-22	s/min_x/min_fs/ and so on	Thomas White

2012-02-22	Make find_projected_peaks() behave like find_intersections()	Thomas White
	Also make sure output_intensities() deals only with integration
2012-02-22	Start work on binary tree	Thomas White

2012-02-22	Remove solid angle correction	Thomas White
	It's never correct when using "bucket" integration, and always correct when using "pixel" integration, so don't give the option.
2012-02-22	Tighter symmetry check	Thomas White

2012-02-22	Use symmetry when simulating on the GPU	Thomas White

2012-02-22	Use symmetry when simulating (on the CPU only)	Thomas White

2012-02-22	pattern_sim: Check validity of numbers passed on command line	Thomas White

2012-02-22	pattern_sim: Add --min-size and --max-size options	Thomas White

2012-02-22	pattern_sim: Update --help	Thomas White

2012-02-22	Handle multiple GPUs	Thomas White

2012-02-22	Zap quats	Thomas White
	The "orientation" quaternion should not rotate the Ewald sphere, but the crystal. This cleans things up a little, removing "orientation" from "struct image".
2012-02-22	pattern_sim: Fix memory leaks	Thomas White

2012-02-22	pattern_sim: Add --really-random option	Thomas White

2012-02-22	pattern_sim: Fussiness	Thomas White

2012-02-22	pattern_sim: Make random numbers really random	Thomas White

2012-02-22	Read beam parameters from file (where appropriate)	Thomas White

2012-02-22	indexamajig: Take output stream as a command line parameter	Thomas White

2012-02-22	Single point of truth for which parameters we use	Thomas White

2012-02-22	pattern_sim: Get image size from detector geometry	Thomas White

2012-02-22	pattern_sim: Fix options	Thomas White

2012-02-22	compare_hkl: Reject reflections with low SNR	Thomas White

2012-02-22	Add the possibility to use a circular (instead of 'crystallographic') ↵	Thomas White
	integration domain
2012-02-22	indexamajig: Add --no-closer-peak option	Thomas White

2012-02-22	Fix unit cell point group memory leak	Thomas White

2012-02-22	Reduce the scope of "count"	Thomas White
	Lists of counts had pervaded every corner of CrystFEL, being used as markers for the presence of reflections. Now we have a better way of doing this, the ReflItemList, and few parts of the suite apart from process_hkl have any business knowing how many observations were made of a particular reflection.
2012-02-22	pattern_sim: Don't go looking for phases if they're not needed	Thomas White
	This allows old reflection lists (without phases) to be used as long as you don't want phased gradients.
2012-02-22	Rationalise polarization option	Thomas White

2012-02-22	indexamajig: Make SA correction optional (but on by default)	Thomas White

2012-02-22	Fix memory leaks	Thomas White

2010-06-11	Tidy up switch statements	Thomas White

2010-06-11	Get detector geometry from file	Thomas White

2010-06-05	pattern_sim: Specify filename for powder pattern on the command line	Thomas White

2010-06-05	pattern_sim: Update --simulation-details	Thomas White

2010-06-05	pattern_sim: Update help	Thomas White

2010-06-05	pattern_sim: Implement phased gradients	Thomas White

2010-06-05	pattern_sim: Fix uninitialised stuff	Thomas White

2010-06-05	Fix/add exit paths	Thomas White

2010-06-05	Bring pattern_sim up to date	Thomas White