CrystFEL - Data processing for serial crystallography

Age	Commit message (Collapse)	Author
2012-02-22	More new geometry fixes	Thomas White

2012-02-22	First round of fallout from new geometry format	Thomas White

2012-02-22	Detect peaks in each panel individually	Thomas White
	This avoids straying off a panel when doing the search.
2012-02-22	Fix badrow direction	Thomas White

2012-02-22	s/min_x/min_fs/ and so on	Thomas White

2012-02-22	Allow badrow_direction = -	Thomas White

2012-02-22	Make find_projected_peaks() behave like find_intersections()	Thomas White
	Also make sure output_intensities() deals only with integration
2012-02-22	The per-shot wavelength is needed for scaling and post refinement	Thomas White

2012-02-22	Work on making iteration work	Thomas White

2012-02-22	Finish implementation of binary tree	Thomas White

2012-02-22	Start work on binary tree	Thomas White

2012-02-22	Remove solid angle correction	Thomas White
	It's never correct when using "bucket" integration, and always correct when using "pixel" integration, so don't give the option.
2012-02-22	Fix silly bug in integrate_peak()	Thomas White

2012-02-22	Fix integrate_peak() problems which caused incorrect peak positions	Thomas White

2012-02-22	Increase MAX_CPEAKS	Thomas White

2012-02-22	indexamajig: Take minimum gradient on command line	Thomas White

2012-02-22	Tidy up previous commit	Thomas White

2012-02-22	Honour --no-index (again), take peak separation in geometry file	Thomas White

2012-02-22	Zap quats	Thomas White
	The "orientation" quaternion should not rotate the Ewald sphere, but the crystal. This cleans things up a little, removing "orientation" from "struct image".
2012-02-22	Don't cull peaks if badrow direction is not specified	Thomas White

2012-02-22	s/hit/cpeak/	Thomas White
	Avoid confusion over the use of the word 'hit'.
2012-02-22	Set sanity level low (to a working value)	Thomas White

2012-02-22	Estimate peak backgrounds	Thomas White

2012-02-22	output_pixels() fixes	Thomas White

2012-02-22	Add a new way of doing the peak integration	Thomas White

2012-02-22	Avoid confusion	Thomas White

2012-02-22	Don't crash if the unit cell is too large	Thomas White

2012-02-22	Restore in_streak()	Thomas White
	Partially reverts commit 18a6007573a8a797d9ea6b472806770e8bbf8950.
2012-02-22	Put I0 and found peaks in stream	Thomas White

2012-02-22	indexamajig: Take output stream as a command line parameter	Thomas White

2012-02-22	Remove duplicated functionality of map_position() and get_q()	Thomas White

2012-02-22	Ignore invalid peaks in sanity check	Thomas White

2012-02-22	Sanity check no longer requires projected peaks	Thomas White

2012-02-22	Update sanity check	Thomas White

2012-02-22	Describe and honour no_index	Thomas White

2012-02-22	Use correct values for circular integration domain	Thomas White

2012-02-22	Add the possibility to use a circular (instead of 'crystallographic') ↵	Thomas White
	integration domain
2012-02-22	Set rounding mode, use lrint() instead of rint()	Thomas White

2012-02-22	indexamajig: Implement --no-closer-peak	Thomas White

2012-02-22	indexamajig: Add --no-closer-peak option	Thomas White

2012-02-22	indexamajig: Get peak threshold on command line	Thomas White

2012-02-22	Handle bad pixel mask correctly (?)	Thomas White

2012-02-22	facetron: Add pre-refinement	Thomas White

2012-02-22	Update peak detection for new data	Thomas White
	- Remove in_streak() - handled by bad regions and preprocessing - Alter threshold
2012-02-22	Don't use cull_peaks() unless geometry is present	Thomas White

2012-02-22	Rationalise polarization option	Thomas White

2012-02-22	indexamajig: Make SA correction optional (but on by default)	Thomas White

2012-02-22	Noisy row improvements	Thomas White
	Handle noisy pixels per panel only Make the direction of elimination configurable
2012-02-22	Skip invalid peaks when counting	Thomas White

2010-06-12	Rotate detector	Thomas White