CrystFEL - Data processing for serial crystallography

Age	Commit message (Collapse)	Author
2018-04-25	ambigator: Add own audit information to stream	Thomas White

2018-04-24	process_hkl: Add stream audit information to reflection list	Thomas White

2018-04-24	partialator: Add stream audit information to reflection list	Thomas White

2018-04-20	Restore peak alignment check and unset multi-lattice indexing as default	Thomas White
	Unfortunately, they seem to be severely reducing data quality. Partially reverts 60c48f3876b0d3c30bf729ce691dbd3f56665c4c
2018-04-20	Set default bandwidth very small	Thomas White
	This seems to have been reducing data quality by overpredicting.
2018-03-02	Use old scaling code	Thomas White

2018-03-02	Remove unnecessary pmodels	Thomas White

2018-03-02	Restore old scaling code	Thomas White

2018-03-02	Don't calculate pobs if reference reflection is weak	Thomas White

2018-02-27	Write logs for test program	Thomas White

2018-02-27	Add --force-bandwidth and --force-radius	Thomas White

2018-02-27	Move pgraph.dat to pr-logs folder	Thomas White

2018-02-27	Add current value to grid plots	Thomas White

2018-02-27	Trap very large profile radius values	Thomas White

2018-02-27	partialator: Add -w and --operator options	Thomas White

2018-02-27	Don't write pgraph.dat if --no-logs	Thomas White

2018-02-27	partialator: Tidy up old log files, and add --no-logs	Thomas White

2018-02-27	Update copyright date	Thomas White

2018-02-27	Increase resolution of grid scan	Thomas White
	Needed to see the minimum in profile radius
2018-02-27	Add indices to spectrum graph	Thomas White

2018-02-27	Take modulus of profile radius	Thomas White
	A bit nasty, but avoids lots of NANs
2018-02-27	Add units to grid scan axes	Thomas White

2018-02-27	Don't write logs if --no-pr	Thomas White
	It just takes too long.
2018-02-27	Reduce granularity of grid scans	Thomas White
	The time taken was excessive.
2018-02-27	Save multiple grid maps	Thomas White

2018-02-27	Trap lambda<0	Thomas White

2018-02-27	Add Ipart values to pgraph	Thomas White

2018-02-27	Write spectra and grid scans after every iteration, and also before the ↵	Thomas White
	first and at end Also, do it in parallel.
2018-02-27	Tidy up and fix	Thomas White

2018-02-27	Write spectrum graph at end again	Thomas White

2018-02-27	write_gridscan(): Use own minimiser	Thomas White

2018-02-27	write_gridscan(): Handle cycle=-1	Thomas White

2018-02-27	Split out setup of minimiser	Thomas White

2018-02-27	Split out grid scan	Thomas White

2018-02-27	Move specgraph stuff to post-refinement.c	Thomas White

2018-02-27	Write logs for every twentieth crystal	Thomas White

2018-02-27	See if pattern fits better in other orientation	Thomas White

2018-02-27	Add grid search output	Thomas White

2018-02-27	Create a new UnitCell when rotating the crystal	Thomas White

2018-02-27	Create a separate image structure for each image	Thomas White
	Because the wavelength is going to be refined and shouldn't be shared. In the future, the wavelength should somehow be refined jointly between multi-crystal images.
2018-02-27	Stop if GSL gives us NAN residual	Thomas White
	Happens if the initial position is close to a tight minimum, so all simplex vertices have bad values.
2018-02-27	Write log files of numbers per simplex iteration	Thomas White

2018-02-27	Reduce verbosity	Thomas White

2018-02-27	Mark crystals as bad if they don't scale properly	Thomas White

2018-02-27	Use "iteration F" in logs	Thomas White

2018-02-27	Combine pgraph and specgraph into one file for all iterations	Thomas White

2018-02-27	Adjust angle step size	Thomas White

2018-02-27	Add some extra messages	Thomas White

2018-02-27	Tidy up	Thomas White

2018-02-27	Reduce the weight on reflections if they have to be scaled up	Thomas White