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2019-05-07Move spectrum type enum to pattern_sim.cThomas White
2019-04-10cell_explorer: Exclude cells when centering type is set to greyThomas White
This is more useful than just changing the colours. Fixes CRYS-224.
2019-04-09cell_explorer: Initialise scd.enforced_cell to NULLThomas White
2019-04-05cell_tool: Add --cslThomas White
2019-04-05cell_explorer: Add enforcement of lattice type restrictions on cell parametersThomas White
2019-04-04cell_explorer: Remove accelerator from "Save histogram data" menu itemThomas White
2019-04-03Fix typoThomas White
2019-04-03cell_explorer: Complain about unknown centeringThomas White
2019-04-03hdfsee: Fix crash with no geometry fileThomas White
2019-03-22cell_explorer: Add option to save histogram dataThomas White
2019-03-20Merge branch 'tom/transformations'Thomas White
2019-03-18FormattingThomas White
2019-03-18hdfsee: Use a fresh detector geometry structure each time a new image is loadedThomas White
If the clen is a literal number, AND there's a coffset, the coffset will be added every time the image data is loaded. Now, it'll start from scratch.
2019-03-13cell_tool: Reject singular transformation matrixThomas White
2019-03-13cell_tool --transform: Write output cellThomas White
2019-03-13cell_tool: Accept unconventional cellThomas White
2019-03-12Rename intmat_intvec_mult to transform_indicesThomas White
2019-03-11cell_tool: Improve messagesThomas White
2019-03-11cell_tool: Add documentation for --transformThomas White
2019-03-11cell_tool: Implement --cell-choicesThomas White
2019-03-11cell_tool: Add --transformThomas White
2019-03-11Keep track of the "un-centering" matrix, as well as the "centering"Thomas White
This makes it easy to reverse the transformation, if required, which it is when comparing centered cells.
2019-03-11New way of doing cell comparisons, similar to match_cell()Thomas White
2019-03-11Fix tolerances (again)Thomas White
2019-03-11Consider fractional cell lengths during comparisonThomas White
This is WAY too slow. Need another algorithm.
2019-03-11cell_tool --find-ambi: Work without -yThomas White
It's not super-helpful, but the manual say it works, so...
2019-03-11Be clear about whether functions need rational or integer transformationsThomas White
2019-03-11Use IntegerMatrix for all unit cell transformationsThomas White
Get rid of UnitCellTransformation, a thin wrapper which didn't do anything.
2019-03-11get_hkl --reindex: Check that the user provides only one reindexing operationThomas White
2019-03-11cell_tool --rings: Add --highresThomas White
2019-03-11cell_tool: Fix length tolerance unitsThomas White
2019-03-11Change horribly confusing names of unit cell comparison functionsThomas White
cells_are_similar -> compare_cell_parameters_and_orientation compare_cells -> compare_reindexed_cell_parameters_and_orientation cell_tool.c:cells_the_same -> cellutils.c:compare_cell_parameters All comparisons now done in real space, checking that centering is the same, and without uncentering anything.
2019-03-11cell_tool: Don't uncenter cells before comparisonThomas White
2019-03-11cell_tool: Check --tolerance has the right number of commasThomas White
2019-03-11Don't use within_tolerance for anglesThomas White
2019-03-11Remove cells_are_similar() from APIThomas White
There are two functions with this name. Avoid confusion.
2019-03-11cell_tool: Add --compare (doesn't seem to work yet for some reason)Thomas White
2019-03-11Fix tolerancesThomas White
2019-03-11cell_tool: Improve option processingThomas White
2019-03-11Show the actual number of ordersThomas White
2019-03-11cell_tool: Use libcrystfel cells_are_similar() functionThomas White
2019-03-11cell_tool: Add --ringsThomas White
2019-03-11cell_tool --uncenter: Write unit cell to fileThomas White
2019-03-11cell_tool: Add --uncenterThomas White
2019-03-11Initial cell_tool (implementing find_ambi only)Thomas White
2019-03-07indexamajig: Status message improvementsThomas White
1. Show the number of hits 2. Keep producing updates while the last patterns are being processed 3. Don't duplicate the code for displaying the status messages
2019-03-07Remove old debug messageThomas White
2019-03-06indexamajig: Rename --min-gradient to --min-squared-gradientThomas White
The eventual aim of this is to deprecate the "--min-gradient" option, resolving the long-standing confusion about whether this option is the gradient or the squared gradient.
2019-03-01partialator: Fix two small memory leaksThomas White
2019-03-01partialator: Check for failed minimiser setup in write_grid()Thomas White
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