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2015-08-01partialator: Rationalise rejection diagnosticsThomas White
2015-08-01partialator: Add --no-free (for testing only)Thomas White
2015-07-25geoptimiser: Fix --helpThomas White
2015-07-23indexamajig: Peak detection method must be parsed before checking peak pathThomas White
2015-07-23Do PR with strong reflections onlyThomas White
2015-07-23Add weightings to PRThomas White
2015-07-23Make convergence criterion more stringentThomas White
2015-07-23Split scaling and post-refinement apart (again)Thomas White
Scaling needs the log residual, PR needs the linear one
2015-07-23Fix PR gradients (again - reverts 22dee8348b165d33262112ed1bbaf7f574b96c7e)Thomas White
The gradients are correct, the test way wrong.
2015-07-23geoptimiser: Better warning messages, auto determination of spot separationValerio Mariani
2015-07-23Refuse to refine the unity modelThomas White
2015-07-23Reject large changes of parametersThomas White
2015-07-21Add random partiality modelThomas White
2015-07-21indexamajig: Tidy up option handlingThomas White
2015-07-21partialator: Tidy up handling of bad crystalsThomas White
2015-07-17partialator: Add --no-prThomas White
2015-07-17Move post refinement multiprocessing stuff to post-refinement.cThomas White
2015-07-16Fix saving of geometry refinement error mapsValerio mariani
2015-07-16partialator: Don't merge reflections where isnan(corr)Thomas White
2015-07-15Decrease maximum |B| to 100 A^2Thomas White
This partially reverts 0bcfe3cdf917ae53764c423c7af865352af47920.
2015-07-13Fix racy queue fillingThomas White
2015-07-13Slow down the status updatesThomas White
2015-07-13Clean up semaphore on interruptThomas White
Necessary since we encourage users to interrupt indexamajig with Ctrl+C Also, generally improve the signal handling.
2015-07-13Use named semaphores instead of unnamedThomas White
2015-07-13indexamajig: Avoid forking while multithreadedThomas White
Conflicts: src/im-sandbox.c
2015-07-13Re-work im-sandboxThomas White
... it certainly needed it.
2015-07-13Fix some warningsThomas White
2015-07-09Tidy up error handling when given dodgy data locationsThomas White
2015-07-09Remove -Werror from OpenCL compilation flagsThomas White
2015-07-09indexamajig: Fix noise filter backup/restoreThomas White
2015-07-09hdfsee: Use "dp" for numbers viewThomas White
2015-07-08Fix PR gradientsThomas White
D'oh! This must have crept in during a big tidyup before a commit
2015-07-08pattern_sim: Add check for HDF5 referencesThomas White
This trips *everyone* up.
2015-07-08pattern_sim: Fix displayed pulse energyThomas White
2015-07-07partialator: Increase maximum B factor to 1000 A^2, and normalise B factorsThomas White
2015-07-07Update AUTHORS, ChangeLog and commentsThomas White
2015-07-07process_hkl: add --even-only and --odd-only options to make half-datasetsKeitaro Yamashita
2015-07-06FormattingThomas White
2015-07-03partialator: Add --start-after/--stop-after options and write symmetry in ↵Keitaro Yamashita
hkl files.
2015-06-25Move predict-refine to libcrystfelThomas White
2015-06-25Tidy up some small leaks and memory bugsThomas White
2015-06-23s/MAP_ANONYMOUS/MAP_ANON/Thomas White
Needed for OSX compatability
2015-06-19Remove old code/formattingThomas White
2015-06-18Replace semaphore with a mutexThomas White
A mutex (in a shared memory segment) is the correct synchronisation primitive here. I had confused myself...
2015-06-17Use a POSIX semaphore for synchronising terminal access during indexingThomas White
Nice side-effect: indexamajig -j and --int-diag can now be used together
2015-06-16partialator: Fix rejection bugsThomas White
2015-06-16pattern_sim: Update documentation and messagesThomas White
2015-06-16partialator: Improve rejectionThomas White
2015-06-15ambigator: Change order of checking command line optionsThomas White
This allows a useful possibility of using only -y/-w to calculate a left coset decomposition.
2015-06-11Fixes for connected panel distance bugsValerio mariani