CrystFEL - Data processing for serial crystallography

Age	Commit message (Collapse)	Author
2015-04-20	Make panel assignments invariant during prediction- and post-refinement	Thomas White
	Reflections appearing and disappearing are problematic when trying to do a least-squares refinement. Therefore, assume that reflections stay on panel and keep them under consideration even if their partialities go to zero (i.e. they drift off Bragg). This should stabilise both refinements, and simplifies quite a lot of code. Collateral "damage": the old "select_intersection()" is now gone.
2014-09-22	Beam file removal, part I	Thomas White

2014-08-13	Fix handling of overlapping reflections	Thomas White

2014-07-24	Suspend indexing statistics while --int-diag is displaying	Thomas White

2014-04-01	Fix resolution cutoff so that it (apparently) works	Thomas White

2014-01-20	RNG overhaul	Thomas White
	Previously, we were using random(), which is really really bad.
2013-11-24	tests/integration_check: Reduce number of trials to 300	Thomas White

2013-11-24	Formatting	Thomas White

2013-11-23	indexamajig: Add --int-diag	Thomas White

2013-11-23	Add Histogram, and plot integration test results	Thomas White

2013-11-23	Run the test 1,000 times	Thomas White

2013-11-23	Increase peak integration radius	Thomas White

2013-11-23	Make tests/integration_check work	Thomas White

2013-11-23	Break off integrate_rings_once()	Thomas White

2013-04-16	Remove "use_saturated" argument to integrate_peak()	Thomas White
	There are no side-effects to setting it either way, and the caller can just set saturated=NULL or ignore the result.
2013-02-05	WIP on updating partialator	Thomas White

2012-10-21	indexamajig: Record number of saturated reflections in stream	Thomas White

2012-10-02	Factorise background mask	Thomas White
	This fixes a speed regression introduced by dca1938a.
2012-06-20	Merge remote-tracking branch 'bitwiz/ken/int_noPkBg'	Thomas White

2012-06-13	Mask peaks in the background calculation of integrate_peak.	Kenneth Beyerlein

2012-06-07	Use max_adu only for final integration	Thomas White
	Saturated pixels seem to be OK during initial peak search
2012-05-21	Fix tests/integration_check for cutoff	Thomas White

2012-03-09	Remove integr_radius field from detector description	Thomas White

2012-03-09	"Final" tweaks to integration and tests	Thomas White

2012-03-09	Compile libcrystfel with -Wall, fix warnings	Thomas White

2012-03-09	indexamajig: Take integration radii on command line	Thomas White

2012-03-09	Update tests/integration_check for new integration	Thomas White
	Conflicts: tests/integration_check.c
2012-03-09	Updates for ADU per eV	Thomas White

2012-03-09	Use ADU per eV in geometry file, rather than ADU per photon in beam file	Thomas White
	Conflicts: src/get_hkl.c tests/morphology_check.c
2012-03-09	Attempt to make the peak integration suck (slightly) less	Thomas White

2012-03-07	indexamajig: Remove polarization correction	Thomas White
	It was totally broken and wrong, and just added noise to the data, and it should be done at the scaling stage instead of now.
2012-02-24	GPL boilerplate for tests	Thomas White

2012-02-22	Fix include paths in tests	Thomas White

2012-02-22	Make fifth integration check agree with actual integration method	Thomas White

2012-02-22	Tidy up peak integration and update unit test	Thomas White

2012-02-22	Tidy up integration and ESD calculation, and pass checks	Thomas White

2012-02-22	Update integration_check for new integration with background subtraction	Thomas White

2012-02-22	Added background subtraction and sigma	Andrew Martin

2012-02-22	Add unit test for peak integration	Thomas White