From 570299b343f0d1ea83c42645db81a335e1322042 Mon Sep 17 00:00:00 2001
From: Thomas White <taw@physics.org>
Date: Tue, 21 Jul 2015 10:21:19 +0200
Subject: Add scripts/turbo-index

---
 Makefile.am         |  2 +-
 scripts/turbo-index | 25 +++++++++++++++++++++++++
 2 files changed, 26 insertions(+), 1 deletion(-)
 create mode 100644 scripts/turbo-index

diff --git a/Makefile.am b/Makefile.am
index bc1058fc..a6acd357 100644
--- a/Makefile.am
+++ b/Makefile.am
@@ -180,7 +180,7 @@ script_DATA = scripts/alternate-stream scripts/cell-please \
               scripts/find-pairs scripts/plot-cc-and-scale.R \
               scripts/ave-resolution scripts/crystal-frame-number \
               scripts/plot-radius-resolution scripts/plot-predict-refine \
-              scripts/detector-shift
+              scripts/detector-shift scripts/turbo-index
 
 EXTRA_DIST += $(script_DATA)
 
diff --git a/scripts/turbo-index b/scripts/turbo-index
new file mode 100644
index 00000000..7554adcb
--- /dev/null
+++ b/scripts/turbo-index
@@ -0,0 +1,25 @@
+#!/bin/sh
+
+RUN=$1
+NOSAMPLE=`echo $RUN | sed -e 's/\-.*$//'`
+
+GEOM=<name of geometry file>
+
+find <path to CXI files>/$RUN -name '*.cxi' > files-${RUN}.lst
+list_events -i files-${RUN}.lst -g $GEOM -o events-${RUN}.lst
+wc -l events-${RUN}.lst
+rm -f split-events-${RUN}.lst files-${RUN}.lst
+split -d -l 500 events-${RUN}.lst split-events-${RUN}.lst
+rm -f events-${RUN}.lst
+
+for FILE in split-events-${RUN}.lst*; do
+
+        STREAM=`echo $FILE | sed -e "s/split-events-${RUN}.lst/${RUN}.stream/"`
+        NAME=`echo $FILE | sed -e "s/split-events-${RUN}.lst/${NOSAMPLE}-/"`
+        echo "$NAME: $FILE  --->  $STREAM"
+
+        bsub -q psanaq -o $NAME.log -J $NAME -n 12 -R "span[hosts=1]" \
+	            indexamajig \
+                           -i $FILE -o $STREAM -j 32 -g $GEOM --peaks=cxi
+
+
-- 
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