From 2eda1de146f75d0116c968c9331bbf2a3d06bf89 Mon Sep 17 00:00:00 2001 From: Thomas White Date: Fri, 7 Jul 2017 11:23:42 +0200 Subject: Documentation for TakeTwo indexamajig options --- doc/man/indexamajig.1 | 8 ++++++++ 1 file changed, 8 insertions(+) (limited to 'doc/man') diff --git a/doc/man/indexamajig.1 b/doc/man/indexamajig.1 index eaf812d6..c3189f22 100644 --- a/doc/man/indexamajig.1 +++ b/doc/man/indexamajig.1 @@ -401,6 +401,14 @@ Skip the prediction refinement step. .PD Display timing data for performance monitoring. +.PD 0 +.IP \fB--taketwo-member-threshold=\fIn\fR +.IP \fB--taketwo-len-tolerance=\fIn\fR +.IP \fB--taketwo-angle-tolerance=\fIn\fR +.IP \fB--taketwo-trace-tolerance=\fIn\fR +.PD +These set low-level parameters for the TakeTwo indexing algorithm. Respectively, the minimum number of vectors in the network before the pattern is considered indexed, the length and angle tolerances (in reciprocal Angstroms and degrees, respectively) and the matrix trace tolerance for considering rotation matrices as equal. + .PD 0 .IP \fB--felix-options\fR .PD -- cgit v1.2.3