From ee2a9703c723d807c4e590906ab6a45868651a81 Mon Sep 17 00:00:00 2001
From: Thomas White <taw@physics.org>
Date: Mon, 3 Mar 2014 15:44:26 +0100
Subject: Include background and peak height in stream

---
 libcrystfel/src/reflist.c | 55 +++++++++++++++++++++++++++++++++++++++++++++++
 1 file changed, 55 insertions(+)

(limited to 'libcrystfel/src/reflist.c')

diff --git a/libcrystfel/src/reflist.c b/libcrystfel/src/reflist.c
index f6fad33d..7bc98788 100644
--- a/libcrystfel/src/reflist.c
+++ b/libcrystfel/src/reflist.c
@@ -100,6 +100,10 @@ struct _refldata {
 	/* Redundancy */
 	int redundancy;
 
+	/* Peak height and mean background */
+	double peak;
+	double mean_bg;
+
 	/* User-specified temporary values */
 	double temp1;
 	double temp2;
@@ -521,6 +525,33 @@ double get_phase(const Reflection *refl, int *have_phase)
 }
 
 
+/**
+ * get_peak:
+ * @refl: A %Reflection
+ *
+ * Returns: the peak height (value of the highest pixel, before background
+ * subtraction) for this reflection.
+ *
+ **/
+double get_peak(const Reflection *refl)
+{
+	return refl->data.peak;
+}
+
+
+/**
+ * get_mean_bg:
+ * @refl: A %Reflection
+ *
+ * Returns: the mean background level for this reflection.
+ *
+ **/
+double get_mean_bg(const Reflection *refl)
+{
+	return refl->data.mean_bg;
+}
+
+
 /**
  * get_temp1:
  * @refl: A %Reflection
@@ -720,6 +751,30 @@ void set_phase(Reflection *refl, double phase)
 }
 
 
+/**
+ * set_peak:
+ * @refl: A %Reflection
+ * @peak: New peak height for the reflection
+ *
+ **/
+void set_peak(Reflection *refl, double peak)
+{
+	refl->data.peak = peak;
+}
+
+
+/**
+ * set_mean_bg:
+ * @refl: A %Reflection
+ * @mean_bg: New peak height for the reflection
+ *
+ **/
+void set_mean_bg(Reflection *refl, double mean_bg)
+{
+	refl->data.mean_bg = mean_bg;
+}
+
+
 /**
  * set_symmetric_indices:
  * @refl: A %Reflection
-- 
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